Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.0e-65 252.3 128 100.0
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 6.0e-62 240.7 128 93.8
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.1e-60 236.5 128 93.0
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 4.3e-60 234.6 128 92.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 4.3e-60 234.6 128 92.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.3e-59 233.0 128 91.4
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.2e-57 226.5 128 89.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.5e-57 226.1 128 89.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.5e-57 226.1 128 90.6
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.8e-56 221.5 128 89.8
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 5.5e-55 217.6 128 85.9
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 5.5e-55 217.6 128 85.9
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.6e-51 206.1 132 81.1
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.1e-51 205.7 131 82.4
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.2e-51 204.1 128 84.4
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 8.2e-51 203.8 131 81.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.1e-50 203.4 131 80.9
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.1e-50 203.4 131 80.9
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.8e-50 202.6 130 83.1
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.8e-50 202.6 131 82.4
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 3.1e-50 201.8 128 82.0
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.1e-50 201.8 131 79.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.3e-50 201.1 133 81.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 5.3e-50 201.1 128 82.0
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 5.3e-50 201.1 131 80.9
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 5.3e-50 201.1 130 79.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.5e-49 199.5 135 78.5
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 3.4e-49 198.4 131 77.9
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.8e-49 197.6 128 80.5
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.2e-48 195.7 128 78.9
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 78.9
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.9e-48 195.3 131 77.9
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.8e-48 194.9 132 77.3
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 8.4e-48 193.7 130 78.5
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 8.4e-48 193.7 130 78.5
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-47 193.4 133 78.2
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-47 193.0 130 78.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.4e-47 193.0 130 78.5
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.9e-47 192.6 129 78.3
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 78.9
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.2e-47 191.4 131 78.6
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.2e-46 189.9 130 76.2
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.1e-46 189.1 134 76.9
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.1e-46 189.1 129 77.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.7e-46 188.7 129 77.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.7e-46 188.7 129 77.5
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.5e-46 188.3 134 77.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 3.5e-46 188.3 129 77.5
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 3.5e-46 188.3 129 77.5
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 3.5e-46 188.3 129 77.5
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 4.6e-46 188.0 131 77.1
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 6.1e-46 187.6 131 76.3
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 6.1e-46 187.6 130 78.5
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 7.9e-46 187.2 128 78.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-45 186.8 131 77.1
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.0e-45 186.8 134 76.1
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.0e-45 186.8 128 75.0
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.3e-45 186.4 131 74.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.8e-45 186.0 129 75.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.8e-45 186.0 131 73.3
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.8e-45 186.0 131 74.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.3e-45 185.7 131 72.5
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.3e-45 185.7 128 76.6
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 3.0e-45 185.3 131 76.3
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 3.0e-45 185.3 128 77.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 3.0e-45 185.3 126 76.2
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 3.0e-45 185.3 126 76.2
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 5.1e-45 184.5 133 76.7
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 8.7e-45 183.7 131 75.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 8.7e-45 183.7 134 74.6
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 133 76.7
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.5e-44 182.2 129 74.4
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.5e-44 182.2 130 76.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 3.3e-44 181.8 131 74.8
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 7.4e-44 180.6 136 72.8
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 7.4e-44 180.6 134 71.6
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.7e-44 180.3 128 76.6
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 9.7e-44 180.3 136 73.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 74.8
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 74.8
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.6e-43 179.5 129 76.7
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.2e-43 179.1 131 73.3
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 2.2e-43 179.1 133 74.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 74.6
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.7e-43 178.3 126 75.4
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.8e-43 177.9 130 73.8
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.3e-43 177.6 131 74.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 8.2e-43 177.2 131 73.3
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 73.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.4e-42 176.4 116 76.7
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 4.1e-42 174.9 128 72.7
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 133 69.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.3e-42 174.5 131 72.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 9.0e-42 173.7 116 77.6
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.5e-41 172.9 125 72.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 2.6e-41 172.2 132 73.5
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.6e-41 172.2 129 75.2
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.6e-41 172.2 128 73.4
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 71.0
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.7e-40 169.5 128 72.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.2e-40 169.1 129 74.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-40 169.1 130 74.6
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-40 169.1 130 74.6
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.2e-40 169.1 130 74.6
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 2.9e-40 168.7 119 72.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.8e-40 168.3 126 73.0
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.0e-40 167.9 129 75.2
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 5.0e-40 167.9 107 82.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 8.5e-40 167.2 124 70.2
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 8.5e-40 167.2 126 73.0
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 8.5e-40 167.2 126 69.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 8.5e-40 167.2 128 70.3
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.9e-39 166.0 127 69.3
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 4.2e-39 164.9 99 83.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.4e-39 163.7 136 71.3
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-38 163.3 126 69.8
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-38 163.3 126 69.8
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.3e-37 159.1 111 74.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.1e-36 156.8 94 80.9
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.5e-36 156.4 111 72.1
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 3.3e-36 155.2 106 77.4
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 7.4e-36 154.1 111 71.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.7e-35 152.9 123 67.5
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.8e-35 151.4 131 67.2
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 6.3e-35 151.0 128 62.5
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 8.2e-35 150.6 111 69.4
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.8e-34 149.4 127 62.2
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 3.4e-33 145.2 116 68.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 4.5e-33 144.8 86 83.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 5.9e-33 144.4 116 68.1
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.0e-32 143.7 128 65.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.3e-32 143.3 95 78.9
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.5e-31 137.9 96 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.7e-30 135.6 134 56.7
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.1e-29 131.3 86 80.2
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 8.8e-29 130.6 83 78.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.8e-29 130.6 97 73.2
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.3e-28 128.6 126 60.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.4e-28 127.5 90 71.1
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.5e-25 118.6 69 85.5
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.5e-25 118.6 128 56.2
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.0e-24 117.1 127 58.3
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.0e-24 114.8 96 66.7
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 3.2e-23 112.1 124 54.8
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.8e-21 106.3 79 69.6
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 5.2e-21 104.8 113 53.1
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-20 103.2 80 68.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.7e-20 101.3 72 69.4
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 4.1e-18 95.1 69 69.6
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 9.1e-18 94.0 67 67.2
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.6e-17 92.4 94 58.5
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.2e-16 89.4 46 97.8
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.5e-16 87.8 71 66.2
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.2e-14 83.6 67 58.2
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 5.5e-07 58.2 73 47.9


User provided reference genes

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