Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 6.2e-41 170.6 104 100.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.1e-32 143.3 104 73.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 3.1e-32 141.7 108 70.4
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.6e-25 119.4 104 81.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 4.1e-24 114.8 104 60.6
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 6.5e-22 107.5 102 72.5
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 7.9e-20 100.5 102 67.6
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.3e-19 99.0 92 54.3
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.9e-19 98.2 102 71.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.1e-19 97.8 94 55.3
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 6.7e-19 97.4 102 72.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.7e-19 97.1 94 54.3
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 3.3e-18 95.1 94 51.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.3e-18 94.7 102 49.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 9.7e-18 93.6 104 51.9
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.2e-17 92.4 91 54.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.2e-17 92.4 102 50.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.8e-17 91.3 84 57.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.2e-17 90.5 93 53.8
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.1e-16 88.6 97 49.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 5.3e-16 87.8 101 63.4
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.0e-15 85.9 103 46.6
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 2.0e-15 85.9 92 55.4
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 2.6e-15 85.5 92 63.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.9e-15 84.3 107 50.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.9e-15 84.3 106 58.5
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 7.7e-15 84.0 106 50.9
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.0e-14 83.6 114 43.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-14 83.6 106 57.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-14 83.2 92 50.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.3e-14 83.2 102 49.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-14 82.8 106 57.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-14 82.8 92 48.9
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-14 82.8 92 48.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.2e-14 82.4 89 49.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.9e-14 82.0 106 51.9
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.9e-14 82.0 95 42.1
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.9e-14 82.0 103 45.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.9e-14 82.0 103 44.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.8e-14 81.6 106 40.6
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.8e-14 81.6 96 43.8
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.0e-14 81.3 104 48.1
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.1e-13 80.1 96 42.7
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.1e-13 80.1 96 42.7
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.1e-13 80.1 102 45.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.4e-13 79.7 106 47.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.2e-13 78.6 106 49.1
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 9.4e-13 77.0 87 43.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 9.4e-13 77.0 89 47.2
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.4e-13 77.0 104 46.2
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-12 76.6 96 45.8
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.2e-12 76.6 99 40.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.6e-12 76.3 103 41.7
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.6e-12 76.3 106 48.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.1e-12 75.9 85 45.9
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-12 75.9 92 46.7
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.1e-12 75.9 98 42.9
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.7e-12 75.5 85 45.9
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.7e-12 75.5 100 42.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.7e-12 75.5 86 44.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-12 75.1 91 45.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-12 75.1 91 45.1
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 3.6e-12 75.1 91 45.1
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 3.6e-12 75.1 91 45.1
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.6e-12 75.1 103 46.6
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 3.6e-12 75.1 87 44.8
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.6e-12 74.7 106 45.3
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.1e-12 74.3 103 46.6
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 6.1e-12 74.3 88 46.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.1e-12 74.3 100 42.0
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 7.9e-12 73.9 106 45.3
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.0e-11 73.6 106 46.2
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.0e-11 73.6 108 42.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.0e-11 73.6 104 45.2
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.0e-11 73.6 95 47.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.4e-11 73.2 90 43.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.4e-11 73.2 91 41.8
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.4e-11 73.2 91 41.8
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.4e-11 73.2 106 44.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.4e-11 73.2 121 43.0
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.8e-11 72.8 110 48.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.8e-11 72.8 104 39.4
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.8e-11 72.8 94 45.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.8e-11 72.8 101 47.5
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.3e-11 72.4 95 43.2
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.3e-11 72.4 104 42.3
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.3e-11 72.4 106 45.3
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.0e-11 72.0 91 44.0
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.0e-11 72.0 119 47.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.0e-11 72.0 113 44.2
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.0e-11 72.0 104 41.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.0e-11 72.0 106 47.2
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 5.1e-11 71.2 91 42.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.1e-11 71.2 91 44.0
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 6.7e-11 70.9 91 42.9
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.7e-11 70.9 91 42.9
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 6.7e-11 70.9 89 43.8
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 8.8e-11 70.5 88 45.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 8.8e-11 70.5 92 42.4
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.1e-10 70.1 108 44.4
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-10 70.1 88 43.2
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.1e-10 70.1 102 40.2
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 2.5e-10 68.9 89 42.7
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.5e-10 68.9 106 40.6
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.5e-10 68.9 92 43.5
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.3e-10 68.2 102 39.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.7e-10 67.8 107 42.1
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.4e-10 67.4 80 46.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.4e-10 67.4 97 45.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 7.4e-10 67.4 92 42.4
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.7e-10 67.0 88 43.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-09 66.2 88 43.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.7e-09 66.2 97 41.2
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.2e-09 65.9 100 43.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.2e-09 65.9 94 43.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.2e-09 65.9 92 43.5
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.8e-09 65.5 104 38.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.7e-09 65.1 106 43.4
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.7e-09 65.1 89 44.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.3e-09 64.3 106 38.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 6.3e-09 64.3 126 38.1
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.3e-09 64.3 86 43.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.1e-08 63.5 92 50.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.1e-08 62.0 90 40.0
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 4.1e-08 61.6 89 41.6
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 4.1e-08 61.6 89 41.6
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.1e-08 61.6 89 42.7
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.3e-08 61.2 90 41.1
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.9e-08 60.8 84 41.7
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 6.9e-08 60.8 103 54.4
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 9.1e-08 60.5 88 40.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 9.1e-08 60.5 97 39.2
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.2e-07 60.1 93 38.7
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.2e-07 60.1 104 37.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.5e-07 59.7 88 40.9
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-07 59.7 104 37.5
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.0e-07 59.3 98 42.9
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 2.0e-07 59.3 106 37.7
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.0e-07 59.3 125 36.8
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.0e-07 59.3 109 41.3
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.6e-07 58.9 86 41.9
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.4e-07 58.5 89 41.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 4.5e-07 58.2 104 36.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 4.5e-07 58.2 97 39.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.5e-07 58.2 129 45.7
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.5e-07 58.2 129 45.7
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 5.9e-07 57.8 96 36.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-06 56.6 80 42.5
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.3e-06 56.6 81 39.5
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 1.7e-06 56.2 79 40.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.9e-06 55.5 95 41.1
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 3.8e-06 55.1 104 35.6
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 3.8e-06 55.1 91 36.3


User provided reference genes

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