Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g043790 Medicago truncatula HOM05D015864 ORTHO05D003230 3.1e-43 177.9 83 100.0
Medtr3g116190 Medicago truncatula HOM05D015864 ORTHO05D004093 3.2e-08 61.6 45 73.3
Medtr6g029430 Medicago truncatula HOM05D015864 ORTHO05D011650 5.5e-08 60.8 45 71.1
Medtr1g043810 Medicago truncatula HOM05D000118 ORTHO05D000098 7.2e-08 60.5 34 88.2
Medtr8g100030 Medicago truncatula HOM05D000860 ORTHO05D003230 1.2e-07 59.7 43 72.1
TPR.G15858 Trifolium pratense HOM05D000118 ORTHO05D000098 2.7e-07 58.5 37 78.4
Medtr5g089650 Medicago truncatula HOM05D015864 ORTHO05D004093 3.6e-07 58.2 45 64.4
Haze_11340 Corylus avellana HOM05D000118 ORTHO05D025078 4.7e-07 57.8 44 68.2
Medtr1g043760 Medicago truncatula HOM05D000118 ORTHO05D000098 4.7e-07 57.8 34 85.3
Medtr1g043770 Medicago truncatula HOM05D000118 ORTHO05D000098 4.7e-07 57.8 38 71.1
Atru.chr4.2130 Acer truncatum HOM05D000118 ORTHO05D000098 8.0e-07 57.0 42 66.7
Glyma.10G007700 Glycine max HOM05D000118 ORTHO05D000098 8.0e-07 57.0 37 75.7
Medtr6g038430 Medicago truncatula HOM05D015864 ORTHO05D004093 8.0e-07 57.0 42 66.7
Sed0002716 Sechium edule HOM05D000118 ORTHO05D000098 8.0e-07 57.0 52 53.8
Atru.chr4.2129 Acer truncatum HOM05D000118 ORTHO05D000098 1.0e-06 56.6 44 68.2
Medtr6g076070 Medicago truncatula HOM05D015864 ORTHO05D004093 1.0e-06 56.6 49 63.3
SGA_v2.0_scaffold308G48090 Striga asiatica HOM05D000118 ORTHO05D000098 1.0e-06 56.6 54 55.6
Medtr8g066785 Medicago truncatula HOM05D015864 ORTHO05D004093 1.4e-06 56.2 50 62.0
TWI09G0143 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 1.8e-06 55.8 46 63.0
TWI09G0340 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 2.3e-06 55.5 46 60.9
TWI73G0809 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 2.3e-06 55.5 41 68.3
TPR.G15872 Trifolium pratense HOM05D000118 ORTHO05D000098 3.0e-06 55.1 37 73.0
EL10Ac1g00916 Beta vulgaris HOM05D000118 ORTHO05D000098 4.0e-06 54.7 62 45.2
Prupe.1G036100 Prunus persica HOM05D000118 ORTHO05D000098 4.0e-06 54.7 50 56.0
Prupe.1G191000 Prunus persica HOM05D000118 ORTHO05D000098 4.0e-06 54.7 69 47.8
TWI09G1396 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 4.0e-06 54.7 38 71.1
TWI56G1407 Tripterygium wilfordii HOM05D000118 ORTHO05D000098 4.0e-06 54.7 38 68.4
Cfa008345 Carpinus fangiana HOM05D000118 ORTHO05D000098 5.2e-06 54.3 36 69.4
Cfa008346 Carpinus fangiana HOM05D000118 ORTHO05D000098 5.2e-06 54.3 36 69.4
Gohir.A02G037500 Gossypium hirsutum HOM05D000118 ORTHO05D000098 5.2e-06 54.3 42 64.3
Lj3C799T2 Lonicera japonica HOM05D000118 ORTHO05D000098 5.2e-06 54.3 36 75.0
Lj3C800T4 Lonicera japonica HOM05D000118 ORTHO05D000098 5.2e-06 54.3 36 75.0
Medtr7g045640 Medicago truncatula HOM05D015864 ORTHO05D004093 5.2e-06 54.3 39 66.7
Atru.chr4.2126 Acer truncatum HOM05D000118 ORTHO05D000098 6.8e-06 53.9 36 72.2
CiPaw.01G187800 Carya illinoinensis HOM05D000118 ORTHO05D000098 6.8e-06 53.9 53 56.6
Glyma.10G007500 Glycine max HOM05D000118 ORTHO05D000098 6.8e-06 53.9 37 70.3
Medtr1g043840 Medicago truncatula HOM05D000118 ORTHO05D000098 6.8e-06 53.9 38 68.4
Medtr1g044105 Medicago truncatula HOM05D000118 ORTHO05D000098 6.8e-06 53.9 37 73.0
Prupe.1G035900 Prunus persica HOM05D000118 ORTHO05D000098 6.8e-06 53.9 50 56.0
RcHm_v2.0_Chr4g0391931 Rosa chinensis HOM05D000118 ORTHO05D000098 6.8e-06 53.9 44 63.6
MSTRG.3905 Avicennia marina HOM05D000118 ORTHO05D000098 8.8e-06 53.5 54 53.7
DCAR_027621 Daucus carota HOM05D000118 ORTHO05D000098 8.8e-06 53.5 76 43.4
Eucgr.H03125 Eucalyptus grandis HOM05D000118 ORTHO05D000098 8.8e-06 53.5 36 75.0
Os03g0690500 Oryza sativa ssp. japonica HOM05D000118 ORTHO05D000098 8.8e-06 53.5 42 59.5
Psat6g137680 Pisum sativum HOM05D000118 ORTHO05D000098 8.8e-06 53.5 44 65.9


User provided reference genes

Program Settings