Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 5.1e-287 990.3 484 100.0
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.2e-280 969.1 484 97.3
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.3e-279 965.7 484 96.5
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 5.6e-278 960.3 484 96.5
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 9.6e-278 959.5 484 95.5
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 4.0e-276 954.1 484 95.2
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 9.0e-276 953.0 484 95.0
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 4.9e-274 947.2 484 94.6
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 5.5e-273 943.7 482 94.4
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 7.1e-273 943.3 484 94.2
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.9e-271 937.6 484 93.6
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.1e-270 936.0 484 92.8
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.1e-270 936.0 484 92.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 4.3e-270 934.1 493 92.9
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 5.6e-270 933.7 484 93.0
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.3e-269 932.6 484 94.0
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.6e-269 932.2 484 92.1
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 2.1e-269 931.8 484 91.9
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.8e-269 930.6 484 92.4
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.2e-269 930.2 484 91.7
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.2e-269 930.2 484 92.1
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-268 929.1 484 90.7
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-268 929.1 484 91.9
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.8e-268 928.7 484 92.1
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.4e-268 928.3 481 92.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.1e-268 927.9 484 91.5
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 4.0e-268 927.5 484 91.7
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.4e-267 924.5 484 91.7
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.5e-267 924.1 484 90.7
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.0e-266 922.9 485 92.2
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.0e-266 922.9 484 90.7
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.0e-266 922.9 484 91.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.0e-266 922.9 484 91.5
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 91.3
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.7e-266 922.2 483 91.5
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 90.3
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 2.2e-266 921.8 484 92.6
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.2e-266 921.8 482 91.9
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 91.3
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 3.8e-266 921.0 484 91.5
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 4.9e-266 920.6 483 91.1
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 4.9e-266 920.6 484 91.1
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 6.5e-266 920.2 483 91.3
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 6.5e-266 920.2 484 91.5
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.4e-265 919.1 481 91.7
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.9e-265 918.7 482 91.9
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 3.2e-265 917.9 477 92.0
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 3.2e-265 917.9 484 90.7
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.5e-265 917.1 484 90.7
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 9.3e-265 916.4 484 91.7
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 9.3e-265 916.4 484 91.5
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.6e-264 915.6 481 91.5
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.1e-264 915.2 484 91.5
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 2.1e-264 915.2 489 90.6
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 91.5
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 91.5
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.7e-264 914.8 483 90.1
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 91.3
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.5e-264 914.4 484 91.3
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 4.6e-264 914.1 484 91.5
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 7.9e-264 913.3 484 91.3
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 7.9e-264 913.3 481 91.9
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.0e-263 912.9 484 91.7
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 1.0e-263 912.9 481 91.5
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.0e-263 912.9 480 92.3
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 91.3
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 2.3e-263 911.8 484 91.1
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.3e-263 911.8 480 91.9
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.0e-263 911.4 481 91.1
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 91.1
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 5.1e-263 910.6 482 90.9
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 5.1e-263 910.6 484 90.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.1e-262 909.4 481 91.3
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.1e-262 909.4 481 90.9
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.9e-262 908.7 484 90.1
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.9e-262 908.7 481 90.6
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.9e-262 908.7 481 90.6
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.5e-262 908.3 485 90.5
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 2.5e-262 908.3 486 90.3
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 3.3e-262 907.9 480 90.8
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 3.3e-262 907.9 478 91.4
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 5.7e-262 907.1 484 91.1
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 7.4e-262 906.7 484 90.9
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 7.4e-262 906.7 486 90.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 9.6e-262 906.4 485 90.9
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.6e-261 905.6 477 90.6
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 4.8e-261 904.0 481 90.2
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 6.3e-261 903.7 481 90.2
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 6.3e-261 903.7 481 90.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.2e-261 903.3 480 90.4
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.8e-260 902.1 473 91.5
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 5.3e-260 900.6 482 89.2
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.2e-259 899.4 453 94.5
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.0e-259 898.7 484 89.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 4.5e-259 897.5 481 89.8
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 2.2e-258 895.2 481 89.6
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.9e-258 894.8 481 89.6
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.1e-257 892.9 480 89.2
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.4e-257 892.5 481 90.0
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.9e-257 892.1 481 88.8
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.5e-257 891.7 480 89.0
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 9.3e-257 889.8 476 90.5
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.2e-256 889.4 458 93.4
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.6e-256 889.0 460 92.8
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.1e-256 888.6 460 92.8
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.7e-256 888.3 479 89.8
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.3e-253 879.4 457 93.0
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 7.2e-249 863.6 484 87.0
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.2e-248 862.8 451 91.1
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.0e-246 855.5 455 90.5
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.7e-246 854.0 478 87.2
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 2.4e-244 848.6 480 84.2
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 9.1e-244 846.7 430 91.2
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.0e-242 843.2 493 83.6
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 3.8e-242 841.3 457 86.2
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 2.3e-239 832.0 434 88.9
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.9e-239 831.2 406 95.8
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.6e-238 828.6 408 94.9
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 8.2e-237 823.5 406 94.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.1e-236 821.6 405 94.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 6.5e-234 813.9 404 94.3
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.3e-229 799.7 433 86.4
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 5.0e-226 787.7 482 80.5
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.8e-223 777.3 381 95.5
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 3.7e-221 771.5 420 83.8
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.7e-219 765.4 436 81.7
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 2.7e-219 765.4 427 82.7
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 6.1e-216 754.2 392 92.1
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.2e-211 740.0 390 92.3
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 2.5e-209 732.3 481 76.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.3e-191 672.5 346 92.2
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-190 670.2 365 87.7
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-184 650.2 482 71.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.0e-182 642.9 395 73.9
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.3e-178 630.2 313 94.2
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-176 623.6 484 68.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-176 623.2 482 68.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.9e-174 614.0 482 68.3
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 3.1e-167 592.4 331 87.6
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.9e-149 531.9 279 89.6
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.5e-142 508.8 351 72.6
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 5.0e-125 452.2 275 74.5
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 9.4e-116 421.4 203 97.5
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.7e-97 359.0 180 91.1
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.7e-96 356.3 191 86.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.1e-91 340.5 170 93.5
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.0e-90 338.2 171 91.8
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.0e-85 321.6 481 42.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.5e-76 291.2 146 93.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 6.0e-70 269.2 146 87.7
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.3e-68 263.5 161 83.9
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 6.4e-64 249.2 125 95.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 4.6e-62 243.0 127 84.3
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.6e-59 233.4 144 82.6
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.6e-54 218.0 284 41.9
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 7.3e-52 209.1 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.2e-51 206.1 102 95.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.4e-50 204.9 124 83.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.6e-38 163.3 105 74.3
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 3.7e-35 153.7 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-34 152.1 77 93.5
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-34 152.1 77 93.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 8.7e-29 132.5 197 37.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.1e-28 132.1 69 92.8
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-28 131.7 71 87.3
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.3e-28 130.2 70 85.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-25 120.9 66 84.8
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.9e-25 119.8 66 83.3
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-22 110.9 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.9e-21 107.1 67 68.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 8.8e-21 105.9 67 73.1
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 3.8e-16 90.5 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.5e-12 78.6 71 54.9
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.7e-11 75.1 72 54.2
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.8e-11 74.3 59 79.7
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 3.7e-11 73.9 72 54.2
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.3e-08 65.5 61 54.1
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.5e-08 63.2 59 61.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 8.0e-06 56.2 38 68.4


User provided reference genes

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