Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.7e-29 131.3 66 100.0
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 1.9e-19 98.6 53 90.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.1e-18 95.1 50 90.0
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.0e-17 92.8 50 86.0
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.6e-16 88.2 50 82.0
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 5.7e-16 87.0 49 81.6
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-15 84.7 49 81.6
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-15 84.7 49 81.6
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 3.7e-15 84.3 50 78.0
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 5.4e-14 80.5 49 77.6
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-13 78.6 49 73.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-13 78.6 49 73.5
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.7e-13 78.2 49 75.5
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.0e-12 76.3 49 75.5
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.3e-12 75.9 49 73.5
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 5.0e-12 73.9 49 69.4
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 6.6e-12 73.6 49 69.4
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.5e-11 71.6 49 71.4
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.3e-11 71.2 49 69.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.3e-11 71.2 49 69.4
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.3e-11 70.9 49 71.4
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.3e-11 70.9 51 64.7
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.3e-11 70.9 51 64.7
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 4.3e-11 70.9 51 64.7
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 9.5e-11 69.7 49 67.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 9.5e-11 69.7 50 66.0
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 9.5e-11 69.7 49 67.3
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.2e-10 69.3 50 64.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.2e-10 69.3 50 64.0
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.2e-10 69.3 50 64.0
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.2e-10 69.3 51 60.8
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.2e-10 69.3 49 67.3
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.6e-10 68.9 49 67.3
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.6e-10 68.9 49 65.3
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 2.1e-10 68.6 49 65.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.1e-10 68.6 49 65.3
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.1e-10 68.6 48 68.8
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.8e-10 68.2 50 62.0
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.8e-10 68.2 49 67.3
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.8e-10 68.2 50 62.0
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 2.8e-10 68.2 49 67.3
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.8e-10 68.2 49 67.3
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 2.8e-10 68.2 50 62.0
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.8e-10 68.2 49 67.3
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.8e-10 68.2 49 63.3
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.8e-10 68.2 49 67.3
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.6e-10 67.8 49 65.3
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.6e-10 67.8 49 65.3
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.6e-10 67.8 49 67.3
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 3.6e-10 67.8 51 58.8
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 4.7e-10 67.4 49 63.3
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 4.7e-10 67.4 49 65.3
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 4.7e-10 67.4 49 65.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 4.7e-10 67.4 49 63.3
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 4.7e-10 67.4 49 63.3
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 6.1e-10 67.0 49 63.3
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 6.1e-10 67.0 50 60.0
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 8.0e-10 66.6 50 60.0
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 8.0e-10 66.6 50 60.0
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 8.0e-10 66.6 50 60.0
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 8.0e-10 66.6 49 67.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 61.2
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 61.2
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 61.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 63.3
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 63.3
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 63.3
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 63.3
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.0e-09 66.2 49 63.3
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.4e-09 65.9 49 63.3
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.4e-09 65.9 49 59.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.4e-09 65.9 50 62.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.4e-09 65.9 49 61.2
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.4e-09 65.9 49 63.3
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.8e-09 65.5 49 61.2
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.8e-09 65.5 49 61.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.8e-09 65.5 49 65.3
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-09 65.5 49 65.3
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-09 65.5 49 65.3
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-09 65.5 49 65.3
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.8e-09 65.5 51 62.7
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.8e-09 65.5 50 58.0
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.3e-09 65.1 50 58.0
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.3e-09 65.1 50 58.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.3e-09 65.1 49 65.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.1e-09 64.7 49 63.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.1e-09 64.7 49 61.2
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 4.0e-09 64.3 49 61.2
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 4.0e-09 64.3 49 63.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.0e-09 64.3 49 63.3
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.2e-09 63.9 46 69.6
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 5.2e-09 63.9 51 56.9
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.2e-09 63.9 49 59.2
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.2e-09 63.9 49 59.2
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 5.2e-09 63.9 49 61.2
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.2e-09 63.9 49 59.2
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 6.8e-09 63.5 49 61.2
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 8.9e-09 63.2 50 58.0
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.2e-08 62.8 49 59.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.0e-08 62.0 52 57.7
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.0e-08 62.0 49 59.2
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.6e-08 61.6 45 62.2
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 2.6e-08 61.6 48 66.7
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.6e-08 61.6 44 65.9
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 3.4e-08 61.2 49 57.1
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 4.4e-08 60.8 49 55.1
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 4.4e-08 60.8 50 54.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 7.5e-08 60.1 48 56.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.3e-07 59.3 47 57.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.3e-07 59.3 50 56.0
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.7e-07 57.8 50 48.0
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 6.4e-07 57.0 49 55.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 8.3e-07 56.6 49 57.1
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 8.3e-07 56.6 53 50.9
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 8.3e-07 56.6 49 59.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 8.3e-07 56.6 48 56.2
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.9e-06 55.5 49 53.1
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.4e-06 55.1 45 55.6
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.4e-06 55.1 49 57.1
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.2e-06 54.7 50 54.0
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 5.4e-06 53.9 49 57.1
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 7.0e-06 53.5 50 50.0
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 9.2e-06 53.1 49 59.2


User provided reference genes

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