Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-38 162.5 80 100.0
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-38 162.5 80 100.0
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.1e-37 159.5 80 97.5
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 5.1e-27 124.0 80 76.2
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.1e-26 122.9 80 80.0
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 7.4e-26 120.2 77 80.5
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 2.2e-25 118.6 80 76.2
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 6.3e-25 117.1 80 76.2
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 3.1e-24 114.8 80 72.5
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.9e-22 108.2 69 79.7
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 8.5e-22 106.7 77 74.0
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.9e-21 105.5 81 60.5
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 4.2e-21 104.4 81 69.1
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 4.7e-20 100.9 82 64.6
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.4e-19 99.4 64 65.6
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 9.7e-18 93.2 82 56.1
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 9.7e-18 93.2 65 63.1
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 3.7e-17 91.3 76 61.8
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 1.3e-14 82.8 77 57.1
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 5.0e-14 80.9 80 58.8
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 8.5e-14 80.1 81 55.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.9e-13 79.0 77 58.4
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 1.2e-12 76.3 85 55.3
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.7e-12 75.1 70 61.4
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.6e-12 74.7 80 52.5
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 4.7e-12 74.3 73 57.5
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.7e-12 74.3 78 50.0
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 4.7e-12 74.3 75 54.7
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 4.7e-12 74.3 75 54.7
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 8.0e-12 73.6 77 51.9
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-11 73.2 77 51.9
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-11 73.2 77 51.9
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.0e-11 73.2 75 57.3
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.0e-11 73.2 80 52.5
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.0e-11 73.2 79 59.5
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 1.4e-11 72.8 81 54.3
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.8e-11 72.4 84 46.4
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.8e-11 72.4 86 46.5
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.3e-11 72.0 80 50.0
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 4.0e-11 71.2 76 53.9
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 4.0e-11 71.2 80 52.5
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.0e-11 71.2 75 54.7
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 4.0e-11 71.2 70 62.9
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 4.0e-11 71.2 86 52.3
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 6.7e-11 70.5 79 49.4
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 8.8e-11 70.1 80 47.5
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 1.1e-10 69.7 76 51.3
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 1.5e-10 69.3 73 54.8
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-10 69.3 77 53.2
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.0e-10 68.9 76 52.6
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.6e-10 68.6 90 41.1
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.6e-10 68.6 76 51.3
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 2.6e-10 68.6 82 47.6
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 3.3e-10 68.2 65 49.2
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.4e-10 67.8 76 53.9
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.4e-10 67.8 92 40.2
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 4.4e-10 67.8 67 58.2
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 4.4e-10 67.8 76 48.7
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.4e-10 67.8 78 55.1
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.4e-10 67.8 78 55.1
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 5.7e-10 67.4 86 53.5
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.7e-10 66.6 68 51.5
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 9.7e-10 66.6 79 49.4
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 9.7e-10 66.6 77 49.4
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 9.7e-10 66.6 75 52.0
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 9.7e-10 66.6 85 42.4
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.3e-09 66.2 78 50.0
Lalb_Chr25g0284961 Lupinus albus HOM05D002385 ORTHO05D002245 1.3e-09 66.2 79 41.8
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 1.7e-09 65.9 95 43.2
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.7e-09 65.9 80 45.0
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.2e-09 65.5 77 53.2
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 2.2e-09 65.5 81 49.4
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.2e-09 65.5 67 58.2
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 2.2e-09 65.5 59 49.2
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.8e-09 65.1 76 53.9
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.8e-09 65.1 75 49.3
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-09 65.1 71 53.5
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 3.7e-09 64.7 77 46.8
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 3.7e-09 64.7 82 51.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.7e-09 64.7 80 51.2
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 3.7e-09 64.7 76 52.6
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 4.8e-09 64.3 76 55.3
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 4.8e-09 64.3 71 59.2
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 4.8e-09 64.3 69 52.2
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 4.8e-09 64.3 56 64.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.3e-09 63.9 61 59.0
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 6.3e-09 63.9 89 49.4
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 8.2e-09 63.5 81 50.6
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 8.2e-09 63.5 68 47.1
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.1e-08 63.2 76 46.1
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.1e-08 63.2 83 49.4
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.4e-08 62.8 75 50.7
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-08 62.8 62 58.1
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.4e-08 62.8 70 57.1
Glyma.08G171300 Glycine max HOM05D002385 ORTHO05D002245 1.8e-08 62.4 61 52.5
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 1.8e-08 62.4 70 57.1
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-08 62.4 74 48.6
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-08 62.0 75 50.7
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 3.1e-08 61.6 81 49.4
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 4.1e-08 61.2 74 54.1
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.1e-08 61.2 73 53.4
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 4.1e-08 61.2 68 51.5
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 4.1e-08 61.2 69 55.1
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 5.3e-08 60.8 67 55.2
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 7.0e-08 60.5 82 48.8
CiPaw.11G059800 Carya illinoinensis HOM05D014462 ORTHO05D018947 7.0e-08 60.5 76 44.7
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 7.0e-08 60.5 75 49.3
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 7.0e-08 60.5 81 42.0
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 7.0e-08 60.5 72 50.0
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 9.1e-08 60.1 76 48.7
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 9.1e-08 60.1 63 55.6
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 9.1e-08 60.1 80 46.2
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.2e-07 59.7 78 47.4
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 1.2e-07 59.7 77 45.5
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.6e-07 59.3 73 54.8
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.6e-07 59.3 61 57.4
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.0e-07 58.9 61 57.4
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 2.0e-07 58.9 61 57.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.0e-07 58.9 68 48.5
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.7e-07 58.5 56 57.1
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-07 58.5 56 57.1
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-07 58.5 56 57.1
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 3.5e-07 58.2 76 48.7
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 3.5e-07 58.2 72 51.4
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 3.5e-07 58.2 65 55.4
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 3.5e-07 58.2 79 53.2
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.5e-07 58.2 78 52.6
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 4.5e-07 57.8 80 43.8
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.5e-07 57.8 56 58.9
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.9e-07 57.4 76 48.7
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 5.9e-07 57.4 80 43.8
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 5.9e-07 57.4 81 44.4
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 5.9e-07 57.4 107 42.1
MELO3C012630.2 Cucumis melo HOM05D002385 ORTHO05D002245 7.7e-07 57.0 74 43.2
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 7.7e-07 57.0 70 51.4
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 7.7e-07 57.0 80 46.2
CsaV3_7G022690 Cucumis sativus L. HOM05D002385 ORTHO05D002245 1.0e-06 56.6 74 44.6
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 1.0e-06 56.6 56 60.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 1.0e-06 56.6 78 44.9
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.0e-06 56.6 59 57.6
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.0e-06 56.6 83 47.0
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.0e-06 56.6 80 46.2
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.3e-06 56.2 80 43.8
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 1.3e-06 56.2 80 43.8
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.3e-06 56.2 80 42.5
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 1.3e-06 56.2 52 59.6
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.3e-06 56.2 60 55.0
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 1.3e-06 56.2 68 51.5
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.7e-06 55.8 56 55.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.7e-06 55.8 83 43.4
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.2e-06 55.5 80 45.0
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 2.9e-06 55.1 80 46.2
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.9e-06 55.1 57 57.9
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.9e-06 55.1 80 45.0
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 2.9e-06 55.1 86 40.7
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.9e-06 55.1 78 52.6
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 3.8e-06 54.7 75 46.7
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 3.8e-06 54.7 68 45.6
Dinv05411 Davidia involucrata HOM05D002385 ORTHO05D002245 3.8e-06 54.7 105 33.3
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.8e-06 54.7 56 57.1
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 3.8e-06 54.7 80 45.0
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.0e-06 54.3 83 48.2
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 5.0e-06 54.3 80 45.0
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 6.5e-06 53.9 79 44.3
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 6.5e-06 53.9 99 35.4
arahy.Tifrunner.gnm1.ann1.H2E4IE Arachis hypogaea HOM05D002385 ORTHO05D002245 8.5e-06 53.5 68 45.6
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 8.5e-06 53.5 60 51.7


User provided reference genes

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