Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-70 269.6 137 100.0
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.4e-37 159.8 80 97.5
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.4e-37 159.8 80 97.5
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 2.3e-27 125.9 80 78.8
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 5.2e-27 124.8 80 82.5
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 9.7e-26 120.6 77 80.5
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 9.7e-26 120.6 80 78.8
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 8.2e-25 117.5 80 76.2
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.4e-24 116.7 80 75.0
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 5.0e-22 108.2 69 79.7
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 1.5e-21 106.7 77 74.0
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.9e-21 106.3 81 71.6
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 3.2e-21 105.5 81 60.5
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.1e-20 101.3 64 67.2
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 8.0e-20 100.9 82 64.6
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.0e-18 96.3 85 56.5
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 4.4e-18 95.1 65 64.6
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 1.3e-17 93.6 76 64.5
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 1.7e-14 83.2 77 57.1
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 6.5e-14 81.3 82 57.3
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.5e-14 81.3 80 58.8
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 1.5e-13 80.1 81 55.6
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.6e-12 76.6 73 60.3
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.6e-12 76.6 104 47.1
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.6e-12 76.6 80 55.0
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 2.1e-12 76.3 85 55.3
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.1e-12 76.3 78 52.6
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 2.1e-12 76.3 75 57.3
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 2.1e-12 76.3 75 57.3
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 3.6e-12 75.5 77 54.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 3.6e-12 75.5 77 54.5
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.6e-12 75.5 79 62.0
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 3.6e-12 75.5 77 53.2
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 6.1e-12 74.7 70 61.4
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 8.0e-12 74.3 81 55.6
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.0e-11 73.9 84 47.6
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.0e-11 73.9 80 52.5
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-11 73.9 86 47.7
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 1.4e-11 73.6 75 57.3
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.8e-11 73.2 80 55.0
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.8e-11 73.2 70 65.7
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.3e-11 72.8 86 53.5
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 3.0e-11 72.4 79 50.6
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 5.2e-11 71.6 76 53.9
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 5.2e-11 71.6 73 57.5
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 5.2e-11 71.6 80 48.8
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 5.2e-11 71.6 77 55.8
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.2e-11 71.6 75 54.7
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 5.2e-11 71.6 76 52.6
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 6.8e-11 71.2 76 55.3
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 8.8e-11 70.9 76 53.9
Lalb_Chr25g0284961 Lupinus albus HOM05D002385 ORTHO05D002245 8.8e-11 70.9 87 43.7
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.5e-10 70.1 76 56.6
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-10 70.1 78 57.7
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-10 70.1 78 57.7
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 2.0e-10 69.7 82 50.0
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 2.0e-10 69.7 76 50.0
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.0e-10 69.7 92 48.9
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-10 69.3 67 61.2
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 3.4e-10 68.9 82 47.6
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 4.4e-10 68.6 64 50.0
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.4e-10 68.6 90 41.1
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 4.4e-10 68.6 78 52.6
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 4.4e-10 68.6 77 50.6
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.7e-10 68.2 92 40.2
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 7.5e-10 67.8 77 55.8
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 7.5e-10 67.8 81 51.9
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 7.5e-10 67.8 67 61.2
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.8e-10 67.4 66 53.0
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 9.8e-10 67.4 76 56.6
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 9.8e-10 67.4 75 52.0
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.3e-09 67.0 84 53.6
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.3e-09 67.0 75 52.0
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-09 67.0 71 56.3
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 1.3e-09 67.0 85 42.4
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.3e-09 67.0 80 53.8
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.7e-09 66.6 82 53.7
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.2e-09 66.2 76 57.9
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 2.2e-09 66.2 77 48.1
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 2.2e-09 66.2 69 55.1
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 2.8e-09 65.9 89 51.7
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-09 65.9 81 53.1
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.8e-09 65.9 56 67.9
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.7e-09 65.5 61 62.3
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.7e-09 65.5 83 42.2
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.8e-09 65.1 75 53.3
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 4.8e-09 65.1 68 48.5
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 4.8e-09 65.1 83 51.8
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 4.8e-09 65.1 59 49.2
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 6.3e-09 64.7 95 42.1
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 6.3e-09 64.7 71 59.2
Glyma.08G171300 Glycine max HOM05D002385 ORTHO05D002245 6.3e-09 64.7 61 54.1
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.3e-09 64.7 76 47.4
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 6.3e-09 64.7 70 60.0
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 6.3e-09 64.7 74 51.4
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 8.3e-09 64.3 75 53.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 8.3e-09 64.3 62 61.3
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 8.3e-09 64.3 70 60.0
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.4e-08 63.5 81 51.9
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-08 63.5 73 56.2
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.8e-08 63.2 67 58.2
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.8e-08 63.2 68 54.4
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.8e-08 63.2 69 58.0
CiPaw.11G059800 Carya illinoinensis HOM05D014462 ORTHO05D018947 2.4e-08 62.8 76 46.1
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.4e-08 62.8 109 42.2
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 3.1e-08 62.4 74 55.4
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 3.1e-08 62.4 82 51.2
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 3.1e-08 62.4 80 48.8
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 3.1e-08 62.4 72 52.8
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 4.1e-08 62.0 76 51.3
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 4.1e-08 62.0 63 58.7
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.1e-08 62.0 81 43.2
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 5.4e-08 61.6 73 57.5
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 7.0e-08 61.2 77 46.8
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 9.1e-08 60.8 61 60.7
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 9.1e-08 60.8 75 49.3
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 9.1e-08 60.8 68 51.5
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.2e-07 60.5 76 51.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.2e-07 60.5 97 40.2
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.2e-07 60.5 61 60.7
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.2e-07 60.5 61 60.7
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 1.2e-07 60.5 56 60.7
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-07 60.5 56 60.7
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-07 60.5 56 60.7
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-07 60.5 72 54.2
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.2e-07 60.5 65 56.9
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.2e-07 60.5 78 55.1
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.0e-07 59.7 76 51.3
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.7e-07 59.3 81 46.9
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 2.7e-07 59.3 107 43.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.7e-07 59.3 85 45.9
MELO3C012630.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.5e-07 58.9 74 44.6
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 3.5e-07 58.9 70 54.3
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-07 58.9 83 48.2
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 3.5e-07 58.9 80 48.8
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 3.5e-07 58.9 80 52.5
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 4.5e-07 58.5 84 44.0
CsaV3_7G022690 Cucumis sativus L. HOM05D002385 ORTHO05D002245 4.5e-07 58.5 74 45.9
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 4.5e-07 58.5 78 47.4
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 4.5e-07 58.5 83 49.4
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 4.5e-07 58.5 68 54.4
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 4.5e-07 58.5 80 48.8
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 5.9e-07 58.2 80 43.8
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 5.9e-07 58.2 56 64.3
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 5.9e-07 58.2 59 61.0
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 7.7e-07 57.8 80 43.8
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 7.7e-07 57.8 52 63.5
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 7.7e-07 57.8 56 58.9
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 7.7e-07 57.8 60 58.3
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.0e-06 57.4 80 47.5
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-06 57.4 78 55.1
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 1.3e-06 57.0 75 49.3
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.7e-06 56.6 80 43.8
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.7e-06 56.6 68 47.1
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.7e-06 56.6 56 60.7
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.7e-06 56.6 57 61.4
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.7e-06 56.6 80 47.5
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 2.3e-06 56.2 80 42.5
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 2.3e-06 56.2 79 46.8
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.3e-06 56.2 83 50.6
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.3e-06 56.2 80 47.5
arahy.Tifrunner.gnm1.ann1.H2E4IE Arachis hypogaea HOM05D002385 ORTHO05D002245 3.8e-06 55.5 68 47.1
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.8e-06 55.5 68 57.4
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 3.8e-06 55.5 99 36.4
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 3.8e-06 55.5 60 55.0
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 3.8e-06 55.5 86 40.7
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 5.0e-06 55.1 80 46.2
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 5.0e-06 55.1 76 50.0
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 5.0e-06 55.1 83 44.6
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 5.0e-06 55.1 56 58.9
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 5.0e-06 55.1 71 52.1
Cc05_g00090 Coffea canephora HOM05D002385 ORTHO05D002245 6.6e-06 54.7 77 48.1
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 6.6e-06 54.7 83 49.4
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 6.6e-06 54.7 56 58.9
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 8.6e-06 54.3 92 40.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.6e-06 54.3 56 55.4
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 8.6e-06 54.3 66 39.4


User provided reference genes

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