Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040190 Medicago truncatula HOM05D000041 ORTHO05D257833 2.2e-48 195.3 95 100.0
Medtr1g040073 Medicago truncatula HOM05D000041 ORTHO05D000061 8.5e-29 130.2 130 55.4
Medtr1g040077 Medicago truncatula HOM05D000041 ORTHO05D000061 8.5e-29 130.2 130 55.4
TPR.G36449 Trifolium pratense HOM05D000041 ORTHO05D000061 2.2e-24 115.5 127 51.2
Medtr8g467150 Medicago truncatula HOM05D000041 ORTHO05D000061 2.0e-22 109.0 131 48.1
TPR.G23026 Trifolium pratense HOM05D000041 ORTHO05D030159 1.2e-19 99.8 127 46.5
TWI38G1245 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 4.2e-12 74.7 125 35.2
Sp6g16380 Schrenkiella parvula HOM05D000041 ORTHO05D000061 1.2e-11 73.2 83 44.6
TWI39G0020 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 2.1e-11 72.4 125 36.0
BcaB01g04295 Brassica carinata HOM05D000041 ORTHO05D000061 3.6e-11 71.6 113 38.9
Sed0013661 Sechium edule HOM05D000041 ORTHO05D000061 8.0e-11 70.5 113 36.3
Rhsim06G0193600 Rhododendron simsii HOM05D000041 ORTHO05D000061 1.0e-10 70.1 122 33.6
Phvul.011G148700 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.4e-10 69.7 130 32.3
GSVIVG01014414001 Vitis vinifera HOM05D000041 ORTHO05D000061 5.2e-10 67.8 122 32.8
vmacro11821 Vaccinium macrocarpon HOM05D000041 ORTHO05D000061 6.8e-10 67.4 129 31.8
VMungo1127G1067 Vigna mungo HOM05D000041 ORTHO05D000061 6.8e-10 67.4 126 31.7
CANSAT11G1603 Cannabis sativa HOM05D000041 ORTHO05D000061 8.8e-10 67.0 121 33.1
Thhalv10016077m.g Eutrema salsugineum HOM05D000041 ORTHO05D000061 8.8e-10 67.0 115 35.7
Glyma.12G220400 Glycine max HOM05D000041 ORTHO05D000061 1.5e-09 66.2 129 33.3
Phvul.005G085600 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.5e-09 66.2 120 35.0
Sed0027359 Sechium edule HOM05D000041 ORTHO05D000061 1.5e-09 66.2 43 67.4
VMungo1080G0800 Vigna mungo HOM05D000041 ORTHO05D000061 1.5e-09 66.2 127 34.6
Glyma.12G148200 Glycine max HOM05D000041 ORTHO05D000061 2.0e-09 65.9 131 30.5
Lj3g0001391 Lotus japonicus HOM05D000041 ORTHO05D000061 2.6e-09 65.5 127 32.3
Dinv08332 Davidia involucrata HOM05D000041 ORTHO05D000061 4.4e-09 64.7 123 33.3
MELO3C018211.2 Cucumis melo HOM05D000041 ORTHO05D000061 5.7e-09 64.3 116 34.5
Nn1g06718 Nelumbo nucifera HOM05D000041 ORTHO05D000061 5.7e-09 64.3 123 32.5
RcHm_v2.0_Chr5g0035071 Rosa chinensis HOM05D000041 ORTHO05D000061 5.7e-09 64.3 120 32.5
RcHm_v2.0_Chr6g0280941 Rosa chinensis HOM05D000041 ORTHO05D000061 5.7e-09 64.3 128 29.7
CiPaw.11G175000 Carya illinoinensis HOM05D000041 ORTHO05D000061 7.5e-09 63.9 123 34.1
FvH4_3g20780 Fragaria vesca HOM05D000041 ORTHO05D000061 7.5e-09 63.9 128 29.7
Prupe.4G188000 Prunus persica HOM05D000041 ORTHO05D000061 9.8e-09 63.5 128 32.0
BcaC04g20344 Brassica carinata HOM05D000041 ORTHO05D000061 1.3e-08 63.2 46 63.0
C09p44690 Brassica napus HOM05D000041 ORTHO05D000061 1.3e-08 63.2 43 62.8
BolC9t57343H Brassica oleracea HOM05D000041 ORTHO05D000061 1.3e-08 63.2 46 63.0
CSS0008334 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 1.3e-08 63.2 129 30.2
CSS0010692 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 1.3e-08 63.2 129 30.2
Aa31LG3G10320 Aethionema arabicum HOM05D000041 ORTHO05D000061 1.7e-08 62.8 54 55.6
AL8G29710 Arabidopsis lyrata HOM05D000041 ORTHO05D000061 1.7e-08 62.8 124 32.3
BcaB08g35790 Brassica carinata HOM05D000041 ORTHO05D000061 1.7e-08 62.8 45 64.4
Cfa020525 Carpinus fangiana HOM05D000041 ORTHO05D000061 1.7e-08 62.8 130 32.3
AUR62029327 Chenopodium quinoa HOM05D000041 ORTHO05D000061 1.7e-08 62.8 63 46.0
ClCG11G018380 Citrullus lanatus HOM05D000041 ORTHO05D000061 1.7e-08 62.8 108 33.3
Thecc.07G074200 Theobroma cacao HOM05D000041 ORTHO05D000061 1.7e-08 62.8 128 32.8
Atru.chr2.2816 Acer truncatum HOM05D000041 ORTHO05D000061 2.2e-08 62.4 58 48.3
BraA10t43258Z Brassica rapa HOM05D000041 ORTHO05D000061 2.8e-08 62.0 116 31.9
Carub.0008s1471 Capsella rubella HOM05D000041 ORTHO05D000061 2.8e-08 62.0 124 32.3
CARHR267640 Cardamine hirsuta HOM05D000041 ORTHO05D000061 3.7e-08 61.6 118 33.9
FAN16G3692 Fragaria x ananassa HOM05D000041 ORTHO05D000061 3.7e-08 61.6 128 31.2
Lalb_Chr20g0109971 Lupinus albus HOM05D000041 ORTHO05D000061 3.7e-08 61.6 121 30.6
QL08p018884 Quercus lobata HOM05D000041 ORTHO05D000061 4.9e-08 61.2 123 33.3
THA.LOC104811850 Tarenaya hassleriana HOM05D000041 ORTHO05D000061 4.9e-08 61.2 119 35.3
Actinidia39413 Actinidia chinensis HOM05D000041 ORTHO05D000061 6.3e-08 60.8 118 29.7
CSS0005288 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 6.3e-08 60.8 130 30.0
CSS0041801 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 6.3e-08 60.8 130 30.0
TAR629G0695 Trochodendron aralioides HOM05D000041 ORTHO05D000061 6.3e-08 60.8 130 32.3
A10p11630 Brassica napus HOM05D000041 ORTHO05D000061 8.3e-08 60.5 115 30.4
Aqoxy4G01372 Aquilegia oxysepala HOM05D000041 ORTHO05D000061 1.1e-07 60.1 55 49.1
CiPaw.12G122200 Carya illinoinensis HOM05D000041 ORTHO05D000061 1.1e-07 60.1 122 35.2
Haze_09510 Corylus avellana HOM05D000041 ORTHO05D000061 1.1e-07 60.1 130 30.8
BcaC01g06305 Brassica carinata HOM05D000041 ORTHO05D000061 1.4e-07 59.7 114 33.3
BolC3t14129H Brassica oleracea HOM05D000041 ORTHO05D000061 1.4e-07 59.7 114 33.3
Gohir.A04G027601 Gossypium hirsutum HOM05D000041 ORTHO05D000061 1.4e-07 59.7 62 48.4
Gohir.D05G360600 Gossypium hirsutum HOM05D000041 ORTHO05D000061 1.4e-07 59.7 62 48.4
Gorai.009G432100 Gossypium raimondii HOM05D000041 ORTHO05D000061 1.4e-07 59.7 62 48.4
AT5G54380 Arabidopsis thaliana HOM05D000041 ORTHO05D000061 1.8e-07 59.3 125 31.2
Duzib268G1637 Durio zibethinus HOM05D000041 ORTHO05D000061 1.8e-07 59.3 103 34.0
Eucgr.F03345 Eucalyptus grandis HOM05D000041 ORTHO05D000061 1.8e-07 59.3 129 28.7
Duzib170G0334 Durio zibethinus HOM05D000041 ORTHO05D000061 2.4e-07 58.9 104 34.6
FvH4_2g16820 Fragaria vesca HOM05D000041 ORTHO05D000061 2.4e-07 58.9 116 28.4
FAN24G0364 Fragaria x ananassa HOM05D000041 ORTHO05D000061 2.4e-07 58.9 116 28.4
Lalb_Chr01g0017001 Lupinus albus HOM05D000041 ORTHO05D000061 2.4e-07 58.9 119 31.1
Nn1g03936 Nelumbo nucifera HOM05D000041 ORTHO05D000061 3.1e-07 58.5 131 29.8
PSO675G2376 Papaver somniferum HOM05D000041 ORTHO05D000061 3.1e-07 58.5 105 33.3
arahy.Tifrunner.gnm1.ann1.3679YS Arachis hypogaea HOM05D000041 ORTHO05D000061 4.1e-07 58.2 118 31.4
arahy.Tifrunner.gnm1.ann1.MJLC3N Arachis hypogaea HOM05D000041 ORTHO05D000061 4.1e-07 58.2 118 31.4
BraA03t10757Z Brassica rapa HOM05D000041 ORTHO05D000061 4.1e-07 58.2 116 31.9
Ciclev10007445m.g Citrus clementina HOM05D000041 ORTHO05D000061 4.1e-07 58.2 66 42.4
C03p17150 Brassica napus HOM05D000041 ORTHO05D000061 5.4e-07 57.8 119 34.5
FAN15G3591 Fragaria x ananassa HOM05D000041 ORTHO05D000061 5.4e-07 57.8 128 27.3
FAN25G1219 Fragaria x ananassa HOM05D000041 ORTHO05D000061 5.4e-07 57.8 100 33.0
FAN27G3483 Fragaria x ananassa HOM05D000041 ORTHO05D000061 5.4e-07 57.8 128 27.3
Gohir.A01G067500 Gossypium hirsutum HOM05D000041 ORTHO05D000061 5.4e-07 57.8 115 33.9
Gohir.D01G054800 Gossypium hirsutum HOM05D000041 ORTHO05D000061 5.4e-07 57.8 102 35.3
Gorai.002G074700 Gossypium raimondii HOM05D000041 ORTHO05D000061 5.4e-07 57.8 102 35.3
SHI21592 Sapria himalayana HOM05D000041 ORTHO05D000061 5.4e-07 57.8 53 49.1
TAR626G0248 Trochodendron aralioides HOM05D000041 ORTHO05D000061 5.4e-07 57.8 124 29.8
arahy.Tifrunner.gnm1.ann1.FHKG10 Arachis hypogaea HOM05D000041 ORTHO05D000061 7.0e-07 57.4 137 29.9
Duzib213G0697 Durio zibethinus HOM05D000041 ORTHO05D000061 7.0e-07 57.4 102 34.3
Lj1P851T21 Lonicera japonica HOM05D000041 ORTHO05D000061 7.0e-07 57.4 52 51.9
COL.COLO4_09464 Corchorus olitorius HOM05D000041 ORTHO05D000061 1.2e-06 56.6 104 33.7
HanXRQChr03g0075911 Helianthus annuus HOM05D000041 ORTHO05D000061 1.2e-06 56.6 49 53.1
Potri.001G405500 Populus trichocarpa HOM05D000041 ORTHO05D000061 1.2e-06 56.6 131 31.3
Sabra16G0266900 Salix brachista HOM05D000041 ORTHO05D000061 1.2e-06 56.6 131 32.1
TPR.G32880 Trifolium pratense HOM05D000041 ORTHO05D000061 1.2e-06 56.6 117 31.6
Ah.06g183630 Amaranthus hybridus HOM05D000041 ORTHO05D000061 1.6e-06 56.2 58 46.6
Lalb_Chr25g0286661 Lupinus albus HOM05D000041 ORTHO05D000061 1.6e-06 56.2 39 61.5
MD03G1221300 Malus domestica HOM05D000041 ORTHO05D000061 1.6e-06 56.2 33 66.7
Lj8C159T6 Lonicera japonica HOM05D000041 ORTHO05D000061 2.0e-06 55.8 106 30.2
AUR62015615 Chenopodium quinoa HOM05D000041 ORTHO05D000061 2.7e-06 55.5 41 56.1
MD11G1238700 Malus domestica HOM05D000041 ORTHO05D000061 2.7e-06 55.5 57 42.1
Nitab4.5_0000297g0010 Nicotiana tabacum HOM05D000041 ORTHO05D000061 4.5e-06 54.7 45 57.8
Peaxi162Scf01111g00007 Petunia axillaris HOM05D000041 ORTHO05D000061 4.5e-06 54.7 130 30.8
Sc03g0009660 Simmondsia chinensis HOM05D000041 ORTHO05D000061 4.5e-06 54.7 117 29.9
Lsat_1_v5_gn_5_7061 Lactuca sativa HOM05D000041 ORTHO05D000061 5.9e-06 54.3 47 46.8
Medtr2g080220 Medicago truncatula HOM05D000041 ORTHO05D000061 5.9e-06 54.3 127 29.1
unitig_746.g26825 Utricularia gibba HOM05D000041 ORTHO05D013799 5.9e-06 54.3 53 45.3
EL10Ac4g08083 Beta vulgaris HOM05D000041 ORTHO05D000061 7.8e-06 53.9 54 46.3
A03p14660 Brassica napus HOM05D000041 ORTHO05D099193 7.8e-06 53.9 43 53.5
MBI18_g32889_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 7.8e-06 53.9 105 28.6


User provided reference genes

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