Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 3.0e-82 308.5 164 100.0
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 7.0e-63 244.2 160 84.4
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 5.5e-60 234.6 172 76.7
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 7.5e-57 224.2 166 75.3
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 4.2e-52 208.4 167 68.9
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 1.4e-50 203.4 161 70.8
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 4.4e-49 198.4 164 68.9
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 8.3e-48 194.1 158 69.0
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 1.2e-46 190.3 164 65.9
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 3.5e-46 188.7 164 65.2
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 4.9e-40 168.3 100 84.0
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 8.3e-40 167.5 101 83.2
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 1.1e-39 167.2 166 57.2
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 1.8e-39 166.4 101 83.2
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 5.4e-39 164.9 169 59.2
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 2.0e-38 162.9 105 79.0
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 4.6e-38 161.8 172 53.5
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 7.8e-38 161.0 168 57.1
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 1.0e-37 160.6 159 61.0
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.3e-37 160.2 105 77.1
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 1.7e-37 159.8 134 64.9
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 3.9e-37 158.7 133 63.9
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 5.0e-37 158.3 115 72.2
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 6.6e-37 157.9 106 78.3
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 1.1e-36 157.1 151 62.3
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 1.9e-36 156.4 157 58.0
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.5e-36 156.0 97 79.4
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.5e-36 156.0 97 79.4
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 3.3e-36 155.6 157 59.9
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 3.3e-36 155.6 101 77.2
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 3.3e-36 155.6 110 71.8
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 4.3e-36 155.2 101 78.2
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 4.3e-36 155.2 110 71.8
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 4.3e-36 155.2 101 78.2
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 5.6e-36 154.8 91 84.6
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 5.6e-36 154.8 168 56.5
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 7.3e-36 154.5 101 78.2
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 7.3e-36 154.5 100 78.0
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.2e-35 153.7 101 79.2
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 1.2e-35 153.7 131 65.6
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 1.6e-35 153.3 147 58.5
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 2.8e-35 152.5 101 76.2
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 3.6e-35 152.1 98 76.5
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 3.6e-35 152.1 103 75.7
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 3.6e-35 152.1 96 80.2
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 4.7e-35 151.8 100 75.0
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 4.7e-35 151.8 96 80.2
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 6.2e-35 151.4 94 79.8
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 6.2e-35 151.4 160 55.6
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 6.2e-35 151.4 100 79.0
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 8.0e-35 151.0 160 54.4
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 8.0e-35 151.0 100 75.0
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 8.0e-35 151.0 95 77.9
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 1.4e-34 150.2 95 77.9
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 1.8e-34 149.8 95 77.9
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 2.3e-34 149.4 95 77.9
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 2.3e-34 149.4 102 75.5
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 2.3e-34 149.4 161 56.5
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 3.1e-34 149.1 95 77.9
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 3.1e-34 149.1 156 57.1
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 76.8
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 76.8
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 76.8
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 4.0e-34 148.7 95 76.8
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 4.0e-34 148.7 163 54.6
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 5.2e-34 148.3 170 53.5
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 5.2e-34 148.3 106 72.6
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 6.8e-34 147.9 134 59.7
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 6.8e-34 147.9 135 60.7
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 6.8e-34 147.9 135 60.7
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 6.8e-34 147.9 135 60.7
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 8.9e-34 147.5 95 76.8
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 8.9e-34 147.5 95 76.8
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.5e-33 146.7 128 60.9
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.0e-33 146.4 94 75.5
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 2.0e-33 146.4 95 75.8
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.6e-33 146.0 154 52.6
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 4.4e-33 145.2 131 61.8
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 4.4e-33 145.2 93 75.3
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 5.8e-33 144.8 166 53.6
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 5.8e-33 144.8 102 72.5
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 7.5e-33 144.4 156 53.2
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 1.3e-32 143.7 101 72.3
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 1.3e-32 143.7 147 58.5
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.7e-32 143.3 98 72.4
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 6.4e-32 141.4 102 71.6
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 8.3e-32 141.0 169 55.0
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 1.1e-31 140.6 148 56.8
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 1.4e-31 140.2 142 59.2
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 1.9e-31 139.8 151 55.0
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 1.9e-31 139.8 97 73.2
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 2.4e-31 139.4 89 76.4
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 3.2e-31 139.0 94 75.5
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.2e-30 137.1 93 72.0
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 1.2e-30 137.1 81 85.2
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 6.0e-30 134.8 94 71.3
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 6.0e-30 134.8 122 62.3
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 3.9e-29 132.1 101 68.3
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 1.1e-28 130.6 90 74.4
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 1.5e-28 130.2 131 57.3
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 4.3e-28 128.6 74 86.5
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 1.6e-27 126.7 77 80.5
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 6.2e-27 124.8 92 67.4
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.8e-26 123.2 81 77.8
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 2.9e-24 115.9 85 67.1
TPR.G35538 Trifolium pratense HOM05D006461 ORTHO05D008199 1.1e-23 114.0 91 71.4
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 2.7e-22 109.4 106 57.5
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 5.1e-21 105.1 88 59.1
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.1e-20 104.0 83 61.4
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 5.8e-17 91.7 81 59.3
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 1.7e-16 90.1 181 37.6
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 1.7e-16 90.1 181 37.6
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 4.9e-16 88.6 79 48.1
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 8.4e-16 87.8 48 91.7
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 1.9e-15 86.7 49 85.7
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 1.0e-13 80.9 100 49.0
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.4e-10 69.7 88 45.5
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 6.9e-10 68.2 49 65.3
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 2.9e-08 62.8 116 37.9
Mapoly0051s0029 Marchantia polymorpha HOM05D002854 ORTHO05D003051 1.2e-06 57.4 122 37.7
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 2.1e-06 56.6 44 68.2
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 6.0e-06 55.1 50 60.0
A01p17770 Brassica napus HOM05D002854 ORTHO05D003051 6.0e-06 55.1 101 36.6
CiPaw.15G085000 Carya illinoinensis HOM05D002854 ORTHO05D003051 6.0e-06 55.1 91 38.5
Aa31LG5G11870 Aethionema arabicum HOM05D002854 ORTHO05D003051 7.8e-06 54.7 97 36.1
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 7.8e-06 54.7 73 49.3
FAN16G0314 Fragaria x ananassa HOM05D000722 ORTHO05D003051 7.8e-06 54.7 96 36.5


User provided reference genes

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