Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 2.3e-224 781.9 399 100.0
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 9.0e-197 690.3 402 88.6
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 9.3e-178 627.1 378 84.9
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 4.8e-174 614.8 385 82.6
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 4.8e-174 614.8 395 79.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 1.1e-165 587.0 364 83.0
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 3.8e-163 578.6 373 79.1
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 3.2e-162 575.5 354 82.5
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 4.6e-161 571.6 313 94.2
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 8.2e-158 560.8 398 73.9
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 2.4e-157 559.3 393 72.3
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 3.2e-154 548.9 361 76.7
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 5.5e-154 548.1 418 68.9
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 7.2e-154 547.7 368 75.8
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 1.6e-153 546.6 384 72.7
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.0e-152 543.9 372 75.5
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 5.1e-152 541.6 381 73.2
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 8.8e-152 540.8 363 74.9
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 8.8e-152 540.8 363 74.9
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 1.1e-151 540.4 372 73.9
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.0e-151 539.7 368 75.5
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 2.0e-151 539.7 370 72.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 2.6e-151 539.3 366 76.0
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 4.4e-151 538.5 407 69.5
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 7.4e-151 537.7 373 72.7
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 1.4e-149 533.5 373 73.2
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 4.1e-149 531.9 372 73.9
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 5.3e-149 531.6 394 70.6
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.2e-148 530.4 374 73.5
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 2.2e-147 526.2 372 70.7
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 2.2e-147 526.2 398 69.3
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 3.8e-147 525.4 355 73.8
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 6.5e-147 524.6 314 86.6
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 1.9e-146 523.1 372 71.2
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 9.4e-146 520.8 355 73.0
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.2e-145 520.4 387 70.0
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 1.2e-145 520.4 355 73.0
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 2.1e-145 519.6 384 69.5
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.7e-145 519.2 355 73.0
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 6.1e-145 518.1 357 72.8
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 6.1e-145 518.1 369 71.0
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 1.0e-144 517.3 373 71.3
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 3.0e-144 515.8 396 68.9
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.5e-143 513.5 355 72.1
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 4.4e-143 511.9 372 70.2
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 7.4e-143 511.1 357 72.0
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 2.8e-142 509.2 370 69.2
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 2.8e-142 509.2 370 69.2
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 6.3e-142 508.1 362 69.6
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 6.3e-142 508.1 342 74.9
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 2.4e-141 506.1 354 72.3
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 4.1e-141 505.4 355 72.1
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 4.1e-141 505.4 369 70.5
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 4.1e-141 505.4 355 71.3
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 5.3e-141 505.0 361 72.3
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 9.1e-141 504.2 421 64.4
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 1.2e-140 503.8 424 63.4
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 1.2e-140 503.8 371 70.1
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 1.6e-140 503.4 376 69.4
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 4.5e-140 501.9 354 73.2
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 5.9e-140 501.5 371 69.3
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 7.7e-140 501.1 355 69.6
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.3e-139 500.4 355 70.4
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.7e-139 500.0 381 68.0
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 2.2e-139 499.6 355 69.6
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 2.2e-139 499.6 355 69.6
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 2.2e-139 499.6 354 71.8
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 2.2e-139 499.6 356 70.2
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 6.5e-139 498.0 349 73.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 8.5e-139 497.7 354 71.8
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.1e-138 497.3 355 69.6
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 1.5e-138 496.9 354 70.1
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.9e-138 496.5 387 67.7
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 7.2e-138 494.6 355 69.9
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 9.4e-138 494.2 359 68.8
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 2.7e-137 492.7 359 69.1
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.7e-137 492.7 355 69.6
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 2.7e-137 492.7 384 66.7
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 8.0e-137 491.1 360 70.3
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 5.7e-135 485.0 397 64.5
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 9.8e-135 484.2 355 68.7
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.7e-134 483.4 356 68.5
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 4.8e-134 481.9 361 68.7
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 2.4e-133 479.6 361 68.7
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 2.0e-132 476.5 345 69.6
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.9e-130 469.9 330 73.3
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.2e-129 467.2 312 74.0
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.7e-129 466.1 312 74.0
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 2.3e-128 463.0 352 67.6
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 9.1e-125 451.1 358 66.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 2.3e-123 446.4 316 69.9
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 8.9e-120 434.5 325 67.1
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 2.4e-117 426.4 271 78.6
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 7.5e-111 404.8 352 57.4
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 8.3e-110 401.4 356 57.9
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.2e-103 380.9 357 54.9
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 6.4e-102 375.2 348 55.5
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 7.3e-98 361.7 257 75.5
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 8.4e-86 321.6 252 61.9
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.4e-85 320.9 417 49.6
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.3e-83 313.5 343 49.0
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 3.0e-83 313.2 267 59.2
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 1.4e-80 304.3 186 83.9
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 2.9e-70 270.0 183 70.5
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 7.1e-69 265.4 185 70.8
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.6e-68 264.2 446 37.4
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.6e-68 264.2 446 37.4
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 6.0e-68 262.3 365 42.2
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.4e-63 246.5 430 36.7
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 2.2e-62 243.8 226 57.1
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 2.4e-56 223.8 342 42.1
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.3e-54 218.0 516 30.0
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.8e-51 207.6 362 37.6
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 6.9e-40 169.1 166 55.4
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 2.2e-38 164.1 133 59.4
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 8.8e-35 152.1 123 59.3
Medtr0804s0020 Medicago truncatula HOM05D006074 ORTHO05D008728 9.7e-26 122.1 60 96.7
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.0e-19 102.1 78 65.4
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 2.3e-19 100.9 68 79.4
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.3e-17 95.1 176 35.8
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 6.3e-17 92.8 68 73.5
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.3e-17 92.8 232 31.5
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 8.3e-17 92.4 65 72.3
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.4e-16 89.7 170 34.1
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 5.4e-16 89.7 61 68.9
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.7e-14 84.7 170 32.4
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 1.0e-11 75.5 92 48.9


User provided reference genes

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