Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 2568.1 1341 100.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 2270.4 1366 86.5
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 2238.4 1394 84.2
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 2225.7 1369 85.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 2009.2 1363 77.3
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1970.3 1345 76.4
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1902.1 1340 74.6
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1839.7 1330 72.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1805.0 1338 71.0
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1745.7 1545 62.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1645.2 1583 59.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1513.4 1394 58.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1489.9 1321 60.8
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1483.4 1412 57.2
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1476.8 1370 58.3
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1469.9 1356 59.3
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1467.2 1372 57.7
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1463.7 1371 57.9
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1458.7 1371 57.7
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1454.1 1390 58.1
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1454.1 1409 57.6
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1453.7 1371 57.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1441.0 1366 57.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1433.3 1366 57.9
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1429.1 1367 57.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1412.9 1382 55.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1401.7 1345 57.9
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1401.3 1392 57.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1397.5 1376 56.0
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1396.3 1443 54.3
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1392.5 1368 55.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1378.6 1346 56.5
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1377.1 1375 55.1
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1361.3 1355 55.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1359.4 1363 55.8
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1354.3 1391 55.7
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1347.0 1197 60.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1343.6 1355 54.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1336.6 1389 53.3
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1335.5 1382 53.7
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1331.6 1385 53.3
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1327.8 1343 54.3
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1320.1 1322 56.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1320.1 1388 52.8
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1305.0 1386 52.0
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1302.3 1369 53.1
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1302.0 1375 53.7
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1299.3 1371 53.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1298.9 1371 53.2
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1292.7 1329 53.6
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1290.0 1368 52.4
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1288.1 1349 53.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1285.8 1328 53.8
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1281.9 1334 53.7
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1277.7 1348 53.0
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1276.9 1358 52.1
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1270.4 1391 52.3
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1270.0 1353 53.3
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1267.3 1375 52.4
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1266.5 1315 53.2
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1252.7 1386 52.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1252.7 1376 51.3
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1236.1 1352 51.7
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1233.0 1313 52.6
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1232.2 1352 51.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1231.5 1315 53.8
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1231.1 1354 51.6
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1228.4 1495 49.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1228.0 1352 51.3
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1224.9 1429 49.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1219.9 1383 52.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1203.0 1381 50.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1184.9 1353 49.3
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1169.5 1353 50.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1165.6 1357 50.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1134.0 1125 56.0
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1087.0 1363 48.1
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.8e-311 1073.2 1370 45.9
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.7e-287 992.3 1028 53.4
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.1e-286 989.2 611 84.9
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.5e-285 985.7 1124 51.9
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.3e-279 967.2 1013 55.1
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-276 956.8 996 53.5
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.2e-264 917.5 1152 46.6
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.1e-243 847.8 1061 50.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 7.8e-237 825.1 813 55.2
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 3.0e-236 823.2 1319 39.7
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.2e-230 802.7 866 53.5
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.4e-225 786.9 725 58.8
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 7.1e-214 748.8 705 56.5
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 3.7e-202 709.9 802 51.1
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.3e-196 690.6 1304 37.9
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.1e-182 645.2 1357 33.8
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 9.2e-161 572.4 522 58.6
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 8.0e-157 559.3 1375 32.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.0e-151 540.8 444 64.4
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.5e-147 526.2 444 61.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.5e-134 484.6 555 49.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 2.3e-132 478.0 341 70.4
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-131 474.9 665 40.5
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.2e-130 471.5 386 62.2
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 7.8e-128 463.0 505 51.7
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.7e-127 461.8 402 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 9.3e-113 412.9 966 32.7
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.3e-92 344.0 269 65.1
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 6.3e-85 320.5 481 40.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.4e-84 318.5 360 52.2
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.7e-78 297.4 433 42.5
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.8e-76 292.4 862 31.8
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.7e-69 269.2 351 44.2
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.0e-66 260.0 572 35.3
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 5.0e-66 257.7 147 87.8
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.0e-63 248.1 451 38.1
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 7.7e-59 233.8 232 56.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.1e-57 229.9 588 34.2
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.0e-55 221.5 359 40.1
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.3e-53 216.5 240 50.0
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 9.1e-52 210.3 172 62.2
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-51 209.1 150 72.7
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.2e-49 201.4 159 66.0
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.7e-45 189.5 147 67.3
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 4.9e-45 188.0 231 47.2
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.1e-44 186.8 194 54.6
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-44 186.0 122 74.6
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.6e-40 172.9 247 40.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 4.6e-35 154.8 164 50.6
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.3e-34 153.3 259 37.5
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 6.6e-34 151.0 88 88.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.1e-33 150.2 1225 21.9
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.0e-31 143.7 138 54.3
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.4e-31 143.3 196 46.9
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.5e-30 139.8 140 53.6
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 2.0e-30 139.4 417 28.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.5e-27 128.6 1245 22.9
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.0e-22 112.8 79 67.1
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-22 112.8 81 69.1
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 7.5e-22 110.9 98 55.1
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 6.4e-21 107.8 64 89.1
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 2.7e-19 102.4 301 26.6
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 3.5e-19 102.1 166 42.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.7e-18 99.8 151 40.4
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 2.3e-18 99.4 51 92.2
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-17 96.7 127 47.2
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 5.6e-17 94.7 61 68.9
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.2e-16 93.6 541 22.0
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.1e-16 92.8 108 54.6
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.2e-16 91.3 79 57.0
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.1e-15 90.5 89 51.7
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.5e-14 86.7 71 66.2
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 9.9e-14 84.0 100 43.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.6e-11 76.6 88 42.0
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 2.1e-11 76.3 110 42.7
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.1e-11 76.3 110 42.7
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.5e-11 75.5 110 42.7
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 4.6e-11 75.1 110 41.8
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.8e-11 74.3 82 46.3
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.0e-10 73.9 140 36.4
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.7e-10 73.2 73 47.9
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 2.1e-08 66.2 68 51.5
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.1e-08 64.3 140 33.6
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.1e-07 62.4 150 32.0
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 3.4e-06 58.9 95 36.8


User provided reference genes

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