Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 7.0e-113 410.6 204 100.0
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 5.6e-110 401.0 204 97.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 5.0e-95 351.3 201 88.1
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 6.6e-95 350.9 193 88.1
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 3.7e-90 335.1 201 82.1
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.1e-88 329.3 202 78.7
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 3.5e-88 328.6 207 81.2
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.1e-80 302.8 193 74.1
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 4.6e-80 301.6 194 75.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.0e-79 300.4 193 73.1
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.3e-79 300.1 184 79.9
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.0e-79 298.9 191 77.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 6.6e-79 297.7 201 76.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 6.6e-79 297.7 191 77.0
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 8.6e-79 297.4 189 74.6
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.1e-78 297.0 196 74.0
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 3.3e-78 295.4 192 74.0
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 5.6e-78 294.7 191 72.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 5.6e-78 294.7 193 72.5
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 5.6e-78 294.7 186 77.4
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 7.3e-78 294.3 185 75.1
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 7.3e-78 294.3 194 72.2
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 7.3e-78 294.3 198 69.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 9.6e-78 293.9 195 69.7
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.2e-77 293.5 195 74.9
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.6e-77 293.1 198 71.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 4.7e-77 291.6 192 72.4
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.1e-76 290.4 192 71.9
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.4e-76 289.3 196 71.4
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.1e-76 288.9 196 70.4
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 5.2e-76 288.1 193 71.0
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.2e-75 287.0 203 70.0
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.5e-75 286.6 193 70.5
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 3.4e-75 285.4 192 71.9
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 4.4e-75 285.0 198 68.7
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 4.4e-75 285.0 197 69.5
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 4.4e-75 285.0 190 70.0
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.2e-74 282.7 196 68.9
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 2.2e-74 282.7 194 69.6
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 6.4e-74 281.2 191 67.5
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 8.4e-74 280.8 207 69.1
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.4e-74 280.8 196 68.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 8.4e-74 280.8 196 68.4
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 1.1e-73 280.4 197 71.1
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.1e-73 280.4 180 75.0
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 9.3e-73 277.3 179 74.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 9.3e-73 277.3 193 68.4
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.2e-72 276.9 187 72.2
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.2e-72 276.9 197 72.6
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 3.5e-72 275.4 183 71.6
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 4.6e-72 275.0 196 69.4
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 6.0e-72 274.6 186 71.5
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 3.0e-71 272.3 196 67.9
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.0e-71 272.3 193 67.4
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 5.1e-71 271.6 194 70.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.6e-71 271.2 194 68.0
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 8.7e-71 270.8 198 69.2
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.1e-70 270.4 201 67.2
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.5e-70 270.0 185 70.3
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.9e-70 269.6 187 67.9
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 5.6e-70 268.1 199 67.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 7.3e-70 267.7 200 67.0
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 9.6e-70 267.3 193 67.9
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 9.6e-70 267.3 203 66.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.8e-69 265.8 195 66.2
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 3.6e-69 265.4 189 65.6
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 8.1e-69 264.2 191 68.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 2.4e-68 262.7 195 66.2
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 5.3e-68 261.5 194 67.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 9.0e-68 260.8 198 64.6
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.2e-67 260.4 194 67.0
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.5e-67 260.0 194 67.0
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.5e-67 260.0 194 67.0
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.6e-67 259.2 167 74.3
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 3.4e-67 258.8 194 67.0
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 4.4e-67 258.5 194 66.5
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 4.4e-67 258.5 194 66.5
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 9.9e-67 257.3 167 73.7
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.3e-66 256.9 207 61.8
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.8e-66 255.4 188 66.0
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.4e-65 252.7 194 66.0
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 5.6e-62 241.5 197 59.4
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.4e-60 236.1 171 66.1
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 4.5e-59 231.9 198 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 7.6e-59 231.1 190 60.5
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 8.4e-58 227.6 177 63.8
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.4e-57 226.1 187 60.4
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 2.1e-56 223.0 180 60.6
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 4.6e-56 221.9 191 57.6
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.1e-54 217.2 154 67.5
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 2.2e-50 203.0 197 54.8
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.0e-47 192.6 196 52.0
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 5.1e-47 191.8 187 51.9
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.5e-46 190.3 148 62.8
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 3.3e-46 189.1 197 50.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.4e-36 157.1 92 81.5
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.7e-34 150.2 110 63.6
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.1e-33 147.5 106 64.2
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.2e-32 144.1 83 83.1
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.8e-29 132.9 81 76.5
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.5e-27 127.1 81 76.5
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 2.6e-27 126.3 114 60.5
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.8e-20 103.6 159 43.4
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.4e-20 103.2 92 56.5
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.5e-19 99.4 76 64.5
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 3.5e-19 99.4 76 64.5
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 2.2e-18 96.7 72 68.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.0e-10 71.2 155 29.7
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.9e-09 67.0 49 59.2
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.9e-09 67.0 166 29.5
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 2.5e-09 66.6 179 30.2
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 3.2e-09 66.2 164 32.3
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 5.5e-09 65.5 173 28.9
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 5.5e-09 65.5 166 29.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 7.2e-09 65.1 169 30.8
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 9.4e-09 64.7 163 31.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.7e-08 62.4 187 27.3
Medtr1g038520 Medicago truncatula HOM05D006499 ORTHO05D007874 6.1e-08 62.0 91 48.4
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 8.0e-08 61.6 172 30.2
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.4e-07 60.8 178 27.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.4e-07 60.8 169 30.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.8e-07 60.5 192 28.6
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.8e-07 60.5 179 26.3
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.8e-07 60.5 167 29.9
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.3e-07 60.1 169 29.6
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.3e-07 60.1 185 30.8
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 6.8e-07 58.5 204 26.0
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.2e-06 57.8 145 28.3
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.2e-06 57.8 179 29.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.2e-06 57.8 172 29.1
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.5e-06 57.4 169 29.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.5e-06 57.4 179 27.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.5e-06 57.4 179 27.4
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.5e-06 57.4 170 31.2
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.5e-06 57.4 167 28.1
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.5e-06 57.4 169 29.6
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 2.0e-06 57.0 169 29.6
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.0e-06 57.0 169 29.0
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.6e-06 56.6 169 29.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 3.4e-06 56.2 169 29.6
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 3.4e-06 56.2 179 27.9
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 4.4e-06 55.8 168 29.8
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 5.7e-06 55.5 169 31.4
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 5.7e-06 55.5 70 38.6
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 5.7e-06 55.5 135 28.1
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 5.7e-06 55.5 169 29.6
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 7.5e-06 55.1 174 27.0
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 7.5e-06 55.1 174 27.0
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 7.5e-06 55.1 169 27.8
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 9.8e-06 54.7 96 34.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 9.8e-06 54.7 169 29.0
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 9.8e-06 54.7 169 27.8


User provided reference genes

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