Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g038510 Medicago truncatula HOM05D003651 ORTHO05D267509 5.7e-74 280.8 139 100.0
Psat6g099560 Pisum sativum HOM05D003651 ORTHO05D009121 4.4e-10 68.6 116 41.4
Glyma.07G197600 Glycine max HOM05D003651 ORTHO05D009121 1.3e-09 67.0 116 40.5
Glyma.20G002400 Glycine max HOM05D003651 ORTHO05D009121 1.3e-09 67.0 116 40.5
TPR.G29791 Trifolium pratense HOM05D003651 ORTHO05D009121 3.8e-09 65.5 36 86.1
COL.COLO4_33051 Corchorus olitorius HOM05D003651 ORTHO05D009121 4.9e-09 65.1 105 42.9
Glyma.09G283400 Glycine max HOM05D003651 ORTHO05D009121 4.9e-09 65.1 116 39.7
Medtr1g038430 Medicago truncatula HOM05D003651 ORTHO05D009121 1.1e-08 63.9 36 83.3
Nitab4.5_0005579g0030 Nicotiana tabacum HOM05D003651 ORTHO05D009121 1.9e-08 63.2 116 34.5
Nitab4.5_0012292g0020 Nicotiana tabacum HOM05D003651 ORTHO05D009121 1.9e-08 63.2 116 34.5
Lj2g0015389 Lotus japonicus HOM05D003651 ORTHO05D009121 2.4e-08 62.8 36 80.6
VMungo0251G3263 Vigna mungo HOM05D003651 ORTHO05D009121 2.4e-08 62.8 116 38.8
Actinidia13716 Actinidia chinensis HOM05D001982 ORTHO05D003938 4.2e-08 62.0 37 78.4
Actinidia38417 Actinidia chinensis HOM05D003651 ORTHO05D009121 7.1e-08 61.2 36 77.8
Duzib132G0272 Durio zibethinus HOM05D003651 ORTHO05D009121 7.1e-08 61.2 118 35.6
Thecc.02G158300 Theobroma cacao HOM05D003651 ORTHO05D009121 9.3e-08 60.8 115 37.4
Lalb_Chr18g0051531 Lupinus albus HOM05D003651 ORTHO05D009121 1.2e-07 60.5 116 35.3
Gohir.D01G013800 Gossypium hirsutum HOM05D003651 ORTHO05D009121 1.6e-07 60.1 115 36.5
Gorai.002G015600 Gossypium raimondii HOM05D003651 ORTHO05D009121 1.6e-07 60.1 115 36.5
Lsat_1_v5_gn_3_36300 Lactuca sativa HOM05D003651 ORTHO05D009121 1.6e-07 60.1 36 75.0
TAR622G1083 Trochodendron aralioides HOM05D003651 ORTHO05D009121 1.6e-07 60.1 115 33.9
arahy.Tifrunner.gnm1.ann1.U7IVDN Arachis hypogaea HOM05D003651 ORTHO05D009121 2.1e-07 59.7 116 37.9
CAN.G39.7 Capsicum annuum HOM05D003651 ORTHO05D009121 2.1e-07 59.7 116 32.8
Migut.C00668 Erythranthe guttata HOM05D003651 ORTHO05D009121 2.1e-07 59.7 36 77.8
Rhsim04G0172100 Rhododendron simsii HOM05D003651 ORTHO05D009121 2.1e-07 59.7 36 72.2
HanXRQChr17g0540981 Helianthus annuus HOM05D003651 ORTHO05D009121 2.7e-07 59.3 36 75.0
Phvul.003G004300 Phaseolus vulgaris HOM05D003651 ORTHO05D009121 2.7e-07 59.3 36 75.0
THA.LOC104818375 Tarenaya hassleriana HOM05D003651 ORTHO05D009121 2.7e-07 59.3 92 41.3
GSVIVG01026228001 Vitis vinifera HOM05D003651 ORTHO05D009121 2.7e-07 59.3 115 34.8
Dinv17622 Davidia involucrata HOM05D003651 ORTHO05D009121 3.5e-07 58.9 36 77.8
TWI53G1450 Tripterygium wilfordii HOM05D003651 ORTHO05D009121 3.5e-07 58.9 36 75.0
Carub.0006s2101 Capsella rubella HOM05D003651 ORTHO05D009121 4.6e-07 58.5 116 35.3
Gohir.A01G012600 Gossypium hirsutum HOM05D003651 ORTHO05D009121 4.6e-07 58.5 115 35.7
MD13G1003800 Malus domestica HOM05D003651 ORTHO05D009121 4.6e-07 58.5 36 75.0
Prupe.1G348700 Prunus persica HOM05D003651 ORTHO05D009121 4.6e-07 58.5 36 75.0
QL03p046497 Quercus lobata HOM05D003651 ORTHO05D009121 4.6e-07 58.5 115 33.9
Hund08607 Selenicereus undatus HOM05D003651 ORTHO05D009121 4.6e-07 58.5 36 75.0
SalBow7G4156 Salvia bowleyana HOM05D003651 ORTHO05D009121 6.0e-07 58.2 116 34.5
Sed0008039 Sechium edule HOM05D003651 ORTHO05D009121 6.0e-07 58.2 36 75.0
Solyc02g014860.3 Solanum lycopersicum HOM05D003651 ORTHO05D009121 6.0e-07 58.2 98 37.8
Sopen02g004380 Solanum pennellii HOM05D003651 ORTHO05D009121 6.0e-07 58.2 98 37.8
CSS0006043 Camellia sinensis var. sinensis HOM05D003651 ORTHO05D009121 7.9e-07 57.8 36 72.2
CARHR190300 Cardamine hirsuta HOM05D003651 ORTHO05D009121 7.9e-07 57.8 116 32.8
CiPaw.05G169300 Carya illinoinensis HOM05D003651 ORTHO05D009121 7.9e-07 57.8 36 72.2
ECA246G4989 Erigeron canadensis HOM05D001982 ORTHO05D007237 7.9e-07 57.8 36 69.4
Cpa.g.sc0.126 Carica papaya HOM05D003651 ORTHO05D009121 1.0e-06 57.4 36 75.0
Nn3g18664 Nelumbo nucifera HOM05D003651 ORTHO05D009121 1.0e-06 57.4 36 75.0
Peaxi162Scf00334g00325 Petunia axillaris HOM05D003651 ORTHO05D009121 1.0e-06 57.4 36 69.4
AT5G23240 Arabidopsis thaliana HOM05D003651 ORTHO05D009121 1.3e-06 57.0 36 72.2
ClCG02G014080 Citrullus lanatus HOM05D003651 ORTHO05D009121 1.3e-06 57.0 36 72.2
MELO3C011750.2 Cucumis melo HOM05D003651 ORTHO05D009121 1.3e-06 57.0 36 72.2
CsaV3_5G006090 Cucumis sativus L. HOM05D003651 ORTHO05D009121 1.3e-06 57.0 36 72.2
PGSC0003DMG400006735 Solanum tuberosum HOM05D003651 ORTHO05D009121 1.3e-06 57.0 98 35.7
vmacro08859 Vaccinium macrocarpon HOM05D003651 ORTHO05D009121 1.3e-06 57.0 36 69.4
vmacro23479 Vaccinium macrocarpon HOM05D003651 ORTHO05D009121 1.3e-06 57.0 36 69.4
CANSAT78G0256 Cannabis sativa HOM05D003651 ORTHO05D009121 1.7e-06 56.6 115 34.8
PGR142G2284 Punica granatum HOM05D003651 ORTHO05D009121 1.7e-06 56.6 115 35.7
FvH4_4g37080 Fragaria vesca HOM05D003651 ORTHO05D009121 2.3e-06 56.2 36 72.2
FAN07G0926 Fragaria x ananassa HOM05D003651 ORTHO05D009121 2.3e-06 56.2 36 72.2
FAN17G1001 Fragaria x ananassa HOM05D003651 ORTHO05D009121 2.3e-06 56.2 36 72.2
HanXRQChr11g0320561 Helianthus annuus HOM05D003651 ORTHO05D009121 2.3e-06 56.2 37 70.3
Hma1.2p1_0044F.1_g026025 Hydrangea macrophylla HOM05D003651 ORTHO05D009121 2.3e-06 56.2 36 69.4
RcHm_v2.0_Chr4g0446831 Rosa chinensis HOM05D003651 ORTHO05D009121 2.3e-06 56.2 36 72.2
Atru.chr11.1140 Acer truncatum HOM05D003651 ORTHO05D009121 3.0e-06 55.8 42 64.3
MSTRG.25132 Avicennia marina HOM05D003651 ORTHO05D009121 3.0e-06 55.8 36 72.2
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.0e-06 55.8 36 72.2
Eucgr.G02581 Eucalyptus grandis HOM05D003651 ORTHO05D009121 3.0e-06 55.8 36 72.2
MBI06_g04985_MAGBIO Magnolia biondii HOM05D003651 ORTHO05D009121 3.0e-06 55.8 42 61.9
MBI06_g16015_MAGBIO Magnolia biondii HOM05D003651 ORTHO05D009121 3.0e-06 55.8 42 61.9
Sabra07G0061200 Salix brachista HOM05D003651 ORTHO05D009121 3.0e-06 55.8 36 72.2
Aqoxy3G04306 Aquilegia oxysepala HOM05D003651 ORTHO05D009121 3.9e-06 55.5 36 72.2
AUR62017710 Chenopodium quinoa HOM05D003651 ORTHO05D009121 3.9e-06 55.5 36 72.2
AUR62032971 Chenopodium quinoa HOM05D003651 ORTHO05D009121 3.9e-06 55.5 36 72.2
Cc11_g03440 Coffea canephora HOM05D003651 ORTHO05D009121 3.9e-06 55.5 116 31.9
Os04g0675400 Oryza sativa ssp. japonica HOM05D003651 ORTHO05D009121 3.9e-06 55.5 42 61.9
Aa31LG11G2690 Aethionema arabicum HOM05D003651 ORTHO05D009121 6.6e-06 54.7 37 67.6
A03p46320 Brassica napus HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
C07p44340 Brassica napus HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
BolC7t44955H Brassica oleracea HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
BraA03t13756Z Brassica rapa HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
PSO063G6422 Papaver somniferum HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
PSO782G1359 Papaver somniferum HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
Sp2g23910 Schrenkiella parvula HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 66.7
SGA_v2.0_scaffold24G10276 Striga asiatica HOM05D003651 ORTHO05D009121 6.6e-06 54.7 36 72.2
ATR0618G209 Amborella trichopoda HOM05D003651 ORTHO05D009121 8.7e-06 54.3 36 69.4
Ciclev10031498m.g Citrus clementina HOM05D003651 ORTHO05D009121 8.7e-06 54.3 36 72.2
DCAR_023462 Daucus carota HOM05D003651 ORTHO05D009121 8.7e-06 54.3 36 72.2
Potri.007G072600 Populus trichocarpa HOM05D003651 ORTHO05D009121 8.7e-06 54.3 36 69.4


User provided reference genes

Program Settings