Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 3.9e-182 641.3 325 100.0
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 9.3e-160 567.0 326 88.7
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 9.4e-144 513.8 305 85.6
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 4.7e-135 485.0 320 77.5
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.0e-134 483.8 322 77.0
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 3.0e-134 482.3 319 79.3
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.5e-133 479.9 320 73.8
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 4.4e-133 478.4 326 74.2
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.5e-128 462.6 316 74.4
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 3.6e-127 458.8 321 73.2
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 2.0e-125 453.0 320 73.1
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 3.6e-103 379.0 304 61.2
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 4.0e-102 375.6 304 60.9
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 2.6e-101 372.9 298 61.7
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 4.9e-100 368.6 313 58.8
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 1.1e-99 367.5 304 61.2
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 1.2e-98 364.0 321 57.0
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.6e-98 363.6 304 60.9
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.7e-98 362.8 297 58.9
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 3.9e-97 359.0 304 58.6
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 1.9e-96 356.7 304 57.6
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.9e-96 356.7 306 57.5
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.3e-96 355.9 304 57.9
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 4.3e-96 355.5 314 57.3
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 2.1e-95 353.2 296 59.8
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 3.6e-95 352.4 292 57.9
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 5.8e-93 345.1 313 54.3
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 1.6e-90 337.0 307 56.7
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.0e-90 336.7 305 55.7
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.7e-90 336.3 319 54.5
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 3.5e-90 335.9 305 55.7
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 2.5e-88 329.7 286 56.6
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.6e-88 328.6 302 55.3
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.6e-88 328.6 302 55.3
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.2e-87 327.4 288 56.9
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.1e-83 314.3 312 56.1
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.3e-81 306.6 287 58.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 8.6e-81 304.7 296 51.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.8e-79 299.7 278 53.2
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 4.7e-79 298.9 295 50.8
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 4.7e-79 298.9 295 51.2
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 4.7e-79 298.9 288 52.1
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 8.1e-79 298.1 288 51.4
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.8e-78 297.0 296 51.0
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.8e-78 297.0 280 51.8
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 6.8e-78 295.0 286 53.5
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.2e-77 294.3 296 50.7
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 5.8e-77 292.0 294 50.3
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.3e-76 290.8 295 51.5
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.4e-75 286.6 281 53.7
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 4.1e-75 285.8 273 53.8
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.7e-73 280.4 255 54.9
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 5.1e-73 278.9 291 50.5
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 6.6e-73 278.5 285 53.3
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 8.6e-73 278.1 300 47.7
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 5.2e-70 268.9 290 49.3
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 1.5e-69 267.3 293 48.1
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 2.0e-69 266.9 222 58.6
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.4e-69 265.8 289 47.4
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 9.9e-69 264.6 289 47.4
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.7e-68 263.8 290 46.9
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.7e-68 263.8 328 46.0
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 7.1e-67 258.5 280 48.2
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 7.1e-67 258.5 209 61.7
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 6.0e-66 255.4 296 47.0
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 3.0e-65 253.1 217 58.5
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 1.9e-64 250.4 343 45.2
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 5.6e-64 248.8 284 46.1
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.2e-61 241.1 216 55.1
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.4e-61 239.6 282 43.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 3.8e-60 236.1 327 44.3
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 9.3e-59 231.5 185 62.7
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 1.6e-58 230.7 277 42.2
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 2.1e-58 230.3 279 41.6
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.7e-58 229.9 185 62.7
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 3.5e-58 229.6 185 62.2
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.8e-57 227.3 234 52.6
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 6.2e-55 218.8 254 45.3
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 3.4e-53 213.0 192 55.2
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.8e-49 200.7 152 64.5
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 4.1e-38 162.9 149 53.7
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 4.7e-18 96.3 196 32.1
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 1.1e-14 85.1 112 39.3


User provided reference genes

Program Settings