Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 3.3e-231 804.7 402 100.0
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.5e-202 708.8 402 87.6
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.3e-200 703.0 402 86.8
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.9e-196 687.6 393 86.3
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-185 652.5 402 78.9
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.8e-184 649.4 402 78.1
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.4e-173 612.5 405 75.3
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.4e-173 612.5 405 75.3
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 5.3e-173 611.3 406 75.6
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.2e-171 605.9 405 75.6
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 7.2e-162 574.3 427 68.6
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 2.4e-157 559.3 404 66.6
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.6e-156 556.6 405 67.9
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 5.9e-156 554.7 404 67.1
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 8.5e-155 550.8 405 66.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 7.2e-154 547.7 406 66.5
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 9.5e-154 547.4 405 66.4
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.4e-152 543.5 403 65.3
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.5e-151 540.0 403 65.5
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 4.4e-151 538.5 405 65.7
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.4e-151 538.5 405 65.4
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 4.4e-151 538.5 406 65.8
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 5.7e-151 538.1 403 65.3
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 7.5e-151 537.7 404 66.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 4.1e-149 531.9 405 64.4
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 7.0e-149 531.2 406 65.3
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 9.2e-149 530.8 404 63.9
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 9.2e-149 530.8 399 67.4
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.2e-148 530.4 404 64.6
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.6e-148 530.0 405 63.5
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.6e-148 530.0 405 66.4
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.0e-148 529.6 403 65.3
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 5.9e-148 528.1 397 66.5
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 7.7e-148 527.7 404 62.1
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.3e-147 526.9 404 64.4
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 2.9e-147 525.8 404 63.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 8.6e-147 524.2 403 63.3
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.5e-146 523.5 404 64.4
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.5e-146 522.7 403 64.8
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 3.3e-146 522.3 424 63.2
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 4.3e-146 521.9 403 64.3
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 9.5e-146 520.8 411 63.7
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.2e-145 520.4 404 64.1
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.2e-145 520.4 404 63.9
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.2e-145 520.4 404 62.4
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 3.6e-145 518.8 407 64.4
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 6.1e-145 518.1 397 65.5
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 6.1e-145 518.1 404 64.4
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 8.0e-145 517.7 405 63.7
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.0e-144 517.3 396 61.9
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.3e-144 516.2 403 63.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 5.2e-144 515.0 405 63.0
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 8.9e-144 514.2 406 64.8
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.2e-143 513.8 406 64.3
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.4e-143 511.9 406 62.1
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 5.7e-143 511.5 417 62.4
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 3.7e-142 508.8 405 62.2
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 6.4e-142 508.1 404 62.1
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.4e-141 506.9 423 61.2
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.2e-141 505.8 406 61.6
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 5.4e-141 505.0 408 60.5
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 5.4e-141 505.0 405 62.2
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 3.5e-140 502.3 411 61.8
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 1.3e-139 500.4 406 62.1
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.3e-139 499.6 411 62.0
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.0e-139 498.4 405 61.5
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 5.0e-139 498.4 407 61.4
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 5.0e-139 498.4 415 62.2
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 6.6e-139 498.0 394 61.7
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 8.6e-139 497.7 412 61.7
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.1e-138 497.3 407 61.4
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.5e-138 496.9 408 60.3
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 2.5e-138 496.1 406 60.3
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 5.6e-138 495.0 411 60.1
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.3e-138 494.6 405 61.5
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.2e-137 493.8 408 61.8
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-137 493.8 405 61.7
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.6e-137 493.4 407 62.4
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.6e-137 493.4 407 62.4
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.7e-137 491.9 405 60.5
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.7e-137 491.9 394 62.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 4.7e-137 491.9 387 65.1
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 8.0e-137 491.1 398 59.8
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.0e-136 490.7 394 62.4
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.4e-136 490.3 424 59.4
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.8e-136 490.0 408 61.0
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 3.1e-136 489.2 343 69.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 7.5e-135 484.6 396 63.4
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 2.0e-132 476.5 481 53.8
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.0e-131 471.9 404 60.1
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.5e-130 469.5 412 58.7
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.3e-130 468.8 400 62.8
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.1e-128 462.6 434 56.5
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.1e-128 462.6 434 56.5
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 6.8e-128 461.5 363 64.2
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.0e-127 459.9 371 63.6
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.0e-127 459.9 371 63.6
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.0e-127 459.9 399 57.9
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 4.4e-127 458.8 371 63.3
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.4e-125 453.8 363 60.6
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.5e-124 449.1 403 60.3
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 6.0e-124 448.4 400 56.5
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.3e-123 446.4 390 58.5
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 1.1e-122 444.1 406 56.4
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 2.8e-121 439.5 398 55.5
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 3.1e-120 436.0 385 56.6
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.6e-119 433.0 397 56.4
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 5.8e-119 431.8 398 56.3
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 2.2e-118 429.9 336 63.1
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 3.8e-118 429.1 400 55.0
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.4e-117 427.2 364 59.6
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.4e-117 425.2 404 53.5
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.6e-116 423.7 317 64.7
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 3.5e-116 422.5 407 54.5
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 7.3e-114 414.8 356 62.1
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.6e-113 413.7 399 53.4
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 4.0e-112 409.1 335 63.6
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.0e-111 406.8 398 51.8
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 3.5e-108 396.0 381 51.7
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 4.6e-108 395.6 403 52.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 8.7e-107 391.3 338 63.9
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.5e-106 389.8 402 51.5
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 9.6e-106 387.9 328 59.8
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.4e-103 379.4 402 50.5
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.3e-102 377.5 402 50.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.3e-102 377.5 384 50.5
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.2e-102 376.7 319 59.9
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.1e-101 374.4 363 52.6
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 5.1e-99 365.5 251 68.5
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.5e-95 354.0 400 47.2
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 9.9e-95 351.3 382 49.2
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 9.9e-95 351.3 404 50.0
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.3e-94 350.9 399 47.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.2e-93 345.9 270 62.2
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 6.0e-92 342.0 400 46.8
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.1e-90 337.8 392 45.9
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.9e-90 337.0 395 46.6
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.6e-90 334.7 262 62.6
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.4e-88 330.9 261 63.6
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 2.7e-84 316.6 387 46.8
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.6e-84 315.8 279 57.3
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.3e-83 313.5 252 61.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.3e-81 307.8 229 64.6
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.1e-81 307.0 404 44.3
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.0e-78 298.1 256 55.5
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.0e-78 298.1 412 42.5
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.6e-76 289.3 263 56.3
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.1e-72 278.1 361 46.3
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.8e-64 250.8 283 48.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 2.6e-63 246.9 440 37.5
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.7e-60 236.9 193 61.1
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.3e-58 229.9 156 66.7
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 2.4e-40 170.6 363 35.0
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 4.5e-39 166.4 472 30.1
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 5.4e-32 142.9 132 57.6
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 3.5e-31 140.2 134 55.2
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.0e-30 138.7 111 58.6
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 3.8e-30 136.7 131 55.0
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 3.8e-30 136.7 501 25.5
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 8.6e-30 135.6 136 51.5
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 4.4e-26 123.2 378 29.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 4.4e-26 123.2 267 34.1
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-25 121.7 268 33.6
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.6e-20 104.8 67 74.6
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.8e-19 101.3 121 49.6
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 2.6e-18 97.4 68 63.2
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.5e-13 80.9 110 45.5
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 4.9e-09 66.6 135 33.3
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 1.1e-08 65.5 64 50.0
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.9e-08 64.7 80 45.0
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.3e-06 57.8 73 50.7


User provided reference genes

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