Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g036770 Medicago truncatula HOM05D000271 ORTHO05D024750 1.5e-83 312.8 159 100.0
Medtr6g462610 Medicago truncatula HOM05D000271 ORTHO05D024750 9.1e-68 260.4 142 94.4
Medtr0006s0210 Medicago truncatula HOM05D000271 ORTHO05D024750 1.6e-64 249.6 137 94.9
Medtr4g051515 Medicago truncatula HOM05D000271 ORTHO05D000742 1.1e-57 226.9 152 78.9
TPR.G39987 Trifolium pratense HOM05D000271 ORTHO05D000742 1.2e-48 196.8 152 69.1
Ca_27134_v3 Cicer arietinum L. HOM05D000271 ORTHO05D000742 1.5e-46 189.9 152 65.8
Psat0s3079g0040 Pisum sativum HOM05D000271 ORTHO05D000742 1.3e-45 186.8 152 67.1
Medtr1g037060 Medicago truncatula HOM05D000271 ORTHO05D024750 1.1e-39 167.2 107 83.2
Lalb_Chr24g0393381 Lupinus albus HOM05D000271 ORTHO05D000742 8.6e-34 147.5 152 53.9
Lalb_Chr19g0136251 Lupinus albus HOM05D000271 ORTHO05D000742 1.6e-32 143.3 152 53.9
Phvul.011G099300 Phaseolus vulgaris HOM05D000271 ORTHO05D000742 1.6e-32 143.3 153 52.3
VMungo1127G1809 Vigna mungo HOM05D000271 ORTHO05D000742 2.3e-31 139.4 153 49.0
Lj3g0009101 Lotus japonicus HOM05D000271 ORTHO05D000742 3.1e-31 139.0 152 50.7
arahy.Tifrunner.gnm1.ann1.UUM6SM Arachis hypogaea HOM05D000271 ORTHO05D000742 1.5e-30 136.7 151 48.3
VMungo1080G0772 Vigna mungo HOM05D000271 ORTHO05D000742 7.6e-30 134.4 154 49.4
arahy.Tifrunner.gnm1.ann1.RTT5QY Arachis hypogaea HOM05D000271 ORTHO05D000742 8.4e-29 131.0 153 47.7
Glyma.12G188900 Glycine max HOM05D000271 ORTHO05D000742 1.9e-28 129.8 160 47.5
Glyma.13G312800 Glycine max HOM05D000271 ORTHO05D000742 1.6e-27 126.7 156 46.8
Glyma.12G095000 Glycine max HOM05D000271 ORTHO05D000742 2.1e-27 126.3 153 49.0
Phvul.005G119200 Phaseolus vulgaris HOM05D000271 ORTHO05D000742 3.5e-27 125.6 154 47.4
arahy.Tifrunner.gnm1.ann1.TG9TSU Arachis hypogaea HOM05D000271 ORTHO05D000742 2.5e-25 119.4 169 42.0
arahy.Tifrunner.gnm1.ann1.VTD8RL Arachis hypogaea HOM05D000271 ORTHO05D000742 2.5e-25 119.4 169 42.0
Glyma.11G178046 Glycine max HOM05D000271 ORTHO05D000742 9.6e-25 117.5 158 46.2
TPR.G4205 Trifolium pratense HOM05D000271 ORTHO05D000742 1.4e-23 113.6 160 43.1
Potri.009G016100 Populus trichocarpa HOM05D000271 ORTHO05D000742 1.2e-22 110.5 151 43.7
CANSAT54G0485 Cannabis sativa HOM05D000271 ORTHO05D000742 1.7e-21 106.7 153 42.5
Sabra16G0127500 Salix brachista HOM05D000271 ORTHO05D000742 6.4e-21 104.8 149 43.0
Haze_23561 Corylus avellana HOM05D000271 ORTHO05D000742 8.4e-21 104.4 150 40.7
Psat5g260760 Pisum sativum HOM05D000271 ORTHO05D000742 8.4e-21 104.4 155 44.5
Potri.001G216300 Populus trichocarpa HOM05D000271 ORTHO05D000742 1.4e-20 103.6 146 45.2
QL01p019567 Quercus lobata HOM05D000271 ORTHO05D000742 4.2e-20 102.1 149 41.6
Dinv18843 Davidia involucrata HOM05D000271 ORTHO05D000742 3.5e-19 99.0 150 40.0
Lj2P960T8 Lonicera japonica HOM05D000271 ORTHO05D000742 3.5e-19 99.0 149 40.3
Actinidia24255 Actinidia chinensis HOM05D000271 ORTHO05D000742 7.8e-19 97.8 148 39.2
Dinv18842 Davidia involucrata HOM05D000271 ORTHO05D000742 7.8e-19 97.8 150 39.3
Atru.chr3.3105 Acer truncatum HOM05D000271 ORTHO05D000742 1.0e-18 97.4 152 37.5
Lj2P958T9 Lonicera japonica HOM05D000271 ORTHO05D000742 1.3e-18 97.1 144 40.3
FAN16G2662 Fragaria x ananassa HOM05D000271 ORTHO05D000742 2.3e-18 96.3 154 39.0
FAN21G2467 Fragaria x ananassa HOM05D000271 ORTHO05D000742 3.0e-18 95.9 154 38.3
FAN25G3401 Fragaria x ananassa HOM05D000271 ORTHO05D000742 3.0e-18 95.9 154 38.3
FvH4_3g26390 Fragaria vesca HOM05D000271 ORTHO05D000742 8.7e-18 94.4 154 37.7
FAN11G0635 Fragaria x ananassa HOM05D000271 ORTHO05D000742 8.7e-18 94.4 154 37.7
Manes.11G101300 Manihot esculenta HOM05D000271 ORTHO05D000742 1.1e-17 94.0 150 37.3
Dinv33534 Davidia involucrata HOM05D000271 ORTHO05D000742 3.3e-17 92.4 152 37.5
Oeu031453.1 Olea europaea HOM05D000271 ORTHO05D000742 7.3e-17 91.3 153 37.3
MD11G1173500 Malus domestica HOM05D000271 ORTHO05D000742 9.6e-17 90.9 146 37.7
Gohir.A07G113400 Gossypium hirsutum HOM05D000271 ORTHO05D000742 1.6e-16 90.1 150 39.3
Duzib170G0490 Durio zibethinus HOM05D000271 ORTHO05D000742 2.1e-16 89.7 150 39.3
Gohir.D07G117000 Gossypium hirsutum HOM05D000271 ORTHO05D000742 2.1e-16 89.7 150 38.0
Oeu051466.1 Olea europaea HOM05D000271 ORTHO05D000742 2.8e-16 89.4 150 35.3
Thecc.09G271600 Theobroma cacao HOM05D000271 ORTHO05D000742 2.8e-16 89.4 150 35.3
Duzib150G1488 Durio zibethinus HOM05D000271 ORTHO05D000742 6.2e-16 88.2 151 38.4
Nitab4.5_0001504g0020 Nicotiana tabacum HOM05D000271 ORTHO05D000742 6.2e-16 88.2 153 38.6
RcHm_v2.0_Chr5g0048571 Rosa chinensis HOM05D000271 ORTHO05D000742 6.2e-16 88.2 153 35.9
Gorai.001G125700 Gossypium raimondii HOM05D000271 ORTHO05D000742 8.1e-16 87.8 150 38.0
Rhsim13G0196600 Rhododendron simsii HOM05D000271 ORTHO05D000742 8.1e-16 87.8 152 34.2
PGSC0003DMG400005928 Solanum tuberosum HOM05D000271 ORTHO05D000742 8.1e-16 87.8 161 38.5
DCAR_018204 Daucus carota HOM05D000271 ORTHO05D000742 1.4e-15 87.0 156 35.3
Peaxi162Scf00345g00098 Petunia axillaris HOM05D000271 ORTHO05D000742 1.4e-15 87.0 155 36.1
TAR369G0175 Trochodendron aralioides HOM05D000271 ORTHO05D000742 1.8e-15 86.7 150 36.7
TAR369G0533 Trochodendron aralioides HOM05D000271 ORTHO05D000742 1.8e-15 86.7 150 36.0
Actinidia07278 Actinidia chinensis HOM05D000271 ORTHO05D000742 2.4e-15 86.3 148 36.5
Migut.D02389 Erythranthe guttata HOM05D000271 ORTHO05D000742 2.4e-15 86.3 150 33.3
Peaxi162Scf00098g00072 Petunia axillaris HOM05D000271 ORTHO05D000742 3.1e-15 85.9 157 38.9
PGSC0003DMG400014732 Solanum tuberosum HOM05D000271 ORTHO05D000742 4.0e-15 85.5 149 38.9
TWI79G0743 Tripterygium wilfordii HOM05D000271 ORTHO05D000742 5.3e-15 85.1 148 35.1
Cpa.g.sc103.13 Carica papaya HOM05D000271 ORTHO05D000742 9.0e-15 84.3 153 33.3
Nitab4.5_0003937g0020 Nicotiana tabacum HOM05D000271 ORTHO05D000742 9.0e-15 84.3 155 36.1
Peaxi162Scf00010g00374 Petunia axillaris HOM05D000271 ORTHO05D000742 1.2e-14 84.0 155 36.8
PSO541G1146 Papaver somniferum HOM05D000271 ORTHO05D000742 1.5e-14 83.6 145 37.2
PSO675G8619 Papaver somniferum HOM05D000271 ORTHO05D000742 1.5e-14 83.6 145 37.2
CANSAT21G1004 Cannabis sativa HOM05D000271 ORTHO05D024750 2.0e-14 83.2 126 40.5
TAR623G1473 Trochodendron aralioides HOM05D000271 ORTHO05D000742 2.0e-14 83.2 148 39.2
Nitab4.5_0000158g0040 Nicotiana tabacum HOM05D000271 ORTHO05D000742 3.4e-14 82.4 155 35.5
Sopen06g030570 Solanum pennellii HOM05D000271 ORTHO05D000742 4.4e-14 82.0 160 36.9
CAN.G226.20 Capsicum annuum HOM05D000271 ORTHO05D000742 7.6e-14 81.3 155 35.5
Solyc06g074140.1 Solanum lycopersicum HOM05D000271 ORTHO05D000742 9.9e-14 80.9 160 35.6
Solyc01g009320.2 Solanum lycopersicum HOM05D000271 ORTHO05D000742 1.7e-13 80.1 149 38.3
Migut.N02452 Erythranthe guttata HOM05D000271 ORTHO05D000742 2.2e-13 79.7 160 34.4
Nn2g14318 Nelumbo nucifera HOM05D000271 ORTHO05D000742 8.4e-13 77.8 150 32.7
Sopen01g004820 Solanum pennellii HOM05D000271 ORTHO05D000742 1.1e-12 77.4 149 37.6
Ciclev10028564m.g Citrus clementina HOM05D000271 ORTHO05D000742 1.4e-12 77.0 151 31.8
Dinv31763 Davidia involucrata HOM05D000271 ORTHO05D000742 1.9e-12 76.6 150 32.7
Prupe.6G145200 Prunus persica HOM05D000271 ORTHO05D000742 1.9e-12 76.6 145 35.2
Lj2C959T2 Lonicera japonica HOM05D000271 ORTHO05D000742 3.2e-12 75.9 133 36.1
SalBow3G2684 Salvia bowleyana HOM05D000271 ORTHO05D000742 3.2e-12 75.9 137 32.1
Actinidia37750 Actinidia chinensis HOM05D000271 ORTHO05D000742 7.1e-12 74.7 147 35.4
CiPaw.10G018100 Carya illinoinensis HOM05D000271 ORTHO05D000742 1.2e-11 73.9 149 34.2
MSTRG.12389 Avicennia marina HOM05D000271 ORTHO05D000742 1.6e-11 73.6 152 32.9
Eucgr.A02584 Eucalyptus grandis HOM05D000271 ORTHO05D000742 2.7e-11 72.8 163 33.1
Eucgr.A02586 Eucalyptus grandis HOM05D000271 ORTHO05D000742 3.5e-11 72.4 163 33.1
Lj1C268T5 Lonicera japonica HOM05D000271 ORTHO05D000742 3.5e-11 72.4 151 32.5
COL.COLO4_25420 Corchorus olitorius HOM05D000271 ORTHO05D000742 6.0e-11 71.6 157 33.1
DCAR_012243 Daucus carota HOM05D000271 ORTHO05D000742 6.0e-11 71.6 152 34.2
Aqoxy1G00650 Aquilegia oxysepala HOM05D000271 ORTHO05D000742 1.3e-10 70.5 150 32.0
QL07p036518 Quercus lobata HOM05D000271 ORTHO05D000742 1.3e-10 70.5 144 32.6
QL07p036567 Quercus lobata HOM05D000271 ORTHO05D000742 1.3e-10 70.5 144 31.9
Psat6g119080 Pisum sativum HOM05D000271 ORTHO05D000742 2.3e-10 69.7 149 34.2
CsaV3_1G043840 Cucumis sativus L. HOM05D000271 ORTHO05D000742 3.0e-10 69.3 137 35.8
PGR119G2125 Punica granatum HOM05D000271 ORTHO05D000742 6.6e-10 68.2 146 32.2
Sabra06G0155900 Salix brachista HOM05D000271 ORTHO05D000742 1.5e-09 67.0 151 29.8
SalBow6G0337 Salvia bowleyana HOM05D000271 ORTHO05D000742 1.5e-09 67.0 135 32.6
ClCG03G012200 Citrullus lanatus HOM05D000271 ORTHO05D000742 2.5e-09 66.2 137 33.6
MELO3C015057.2 Cucumis melo HOM05D000271 ORTHO05D000742 2.5e-09 66.2 137 34.3
TWI53G0896 Tripterygium wilfordii HOM05D000271 ORTHO05D000742 2.5e-09 66.2 146 34.2
CiPaw.09G021300 Carya illinoinensis HOM05D000271 ORTHO05D000742 4.3e-09 65.5 151 30.5
Potri.016G069500 Populus trichocarpa HOM05D000271 ORTHO05D000742 4.3e-09 65.5 143 30.1
CSS0004395 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D000742 7.3e-09 64.7 147 33.3
Gohir.A09G099900 Gossypium hirsutum HOM05D000271 ORTHO05D000742 9.6e-09 64.3 150 33.3
Gorai.006G116300 Gossypium raimondii HOM05D000271 ORTHO05D000742 9.6e-09 64.3 150 33.3
Sabra16G0070300 Salix brachista HOM05D000271 ORTHO05D000742 1.3e-08 63.9 144 30.6
Sabra16G0072400 Salix brachista HOM05D000271 ORTHO05D000742 1.3e-08 63.9 144 30.6
RcHm_v2.0_Chr3g0476021 Rosa chinensis HOM05D000271 ORTHO05D000742 1.6e-08 63.5 151 32.5
Eucgr.J00575 Eucalyptus grandis HOM05D000271 ORTHO05D000742 2.8e-08 62.8 151 29.1
Gohir.D09G099300 Gossypium hirsutum HOM05D000271 ORTHO05D000742 2.8e-08 62.8 150 32.7
Eucgr.A02583 Eucalyptus grandis HOM05D000271 ORTHO05D000742 4.8e-08 62.0 147 32.0
HanXRQChr14g0431611 Helianthus annuus HOM05D000271 ORTHO05D000742 4.8e-08 62.0 150 28.7
Lsat_1_v5_gn_2_34501 Lactuca sativa HOM05D000271 ORTHO05D000742 4.8e-08 62.0 149 30.2
FvH4_6g20390 Fragaria vesca HOM05D000271 ORTHO05D000742 6.2e-08 61.6 151 31.8
FAN14G0635 Fragaria x ananassa HOM05D000271 ORTHO05D000742 6.2e-08 61.6 151 31.8
Cc06_g06620 Coffea canephora HOM05D000271 ORTHO05D000742 8.1e-08 61.2 152 28.9
FAN05G3024 Fragaria x ananassa HOM05D000271 ORTHO05D000742 8.1e-08 61.2 151 31.8
FAN05G5681 Fragaria x ananassa HOM05D000271 ORTHO05D000742 8.1e-08 61.2 151 31.8
Nitab4.5_0004988g0010 Nicotiana tabacum HOM05D000271 ORTHO05D000742 8.1e-08 61.2 149 30.2
AUR62001555 Chenopodium quinoa HOM05D000271 ORTHO05D000742 1.1e-07 60.8 129 28.7
FAN09G3406 Fragaria x ananassa HOM05D000271 ORTHO05D000742 1.1e-07 60.8 151 31.8
Gorai.006G149000 Gossypium raimondii HOM05D000271 ORTHO05D000742 1.4e-07 60.5 147 32.0
FAN02G4568 Fragaria x ananassa HOM05D000271 ORTHO05D000742 1.8e-07 60.1 151 31.1
COL.COLO4_29567 Corchorus olitorius HOM05D000271 ORTHO05D000742 2.4e-07 59.7 148 31.1
Duzib093G0180 Durio zibethinus HOM05D000271 ORTHO05D000742 2.4e-07 59.7 146 34.9
Potri.006G202700 Populus trichocarpa HOM05D000271 ORTHO05D000742 2.4e-07 59.7 144 30.6
Sed0010262 Sechium edule HOM05D000271 ORTHO05D000742 2.4e-07 59.7 150 33.3
Nitab4.5_0000077g0090 Nicotiana tabacum HOM05D000271 ORTHO05D000742 3.1e-07 59.3 157 28.0
Lj5g0016510 Lotus japonicus HOM05D000271 ORTHO05D000742 4.0e-07 58.9 148 28.4
EL10Ac7g16291 Beta vulgaris HOM05D000271 ORTHO05D000742 9.0e-07 57.8 147 27.9
Gohir.A09G133800 Gossypium hirsutum HOM05D000271 ORTHO05D000742 9.0e-07 57.8 147 32.0
Lalb_Chr02g0154441 Lupinus albus HOM05D000271 ORTHO05D000742 9.0e-07 57.8 145 30.3
Thecc.05G105300 Theobroma cacao HOM05D000271 ORTHO05D000742 1.5e-06 57.0 146 30.8
vmacro07470 Vaccinium macrocarpon HOM05D000271 ORTHO05D000742 2.6e-06 56.2 157 31.2
Oeu045050.1 Olea europaea HOM05D000271 ORTHO05D000742 4.5e-06 55.5 150 27.3


User provided reference genes

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