Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.3e-74 283.1 157 100.0
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.3e-74 283.1 157 100.0
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 5.1e-47 191.4 157 70.1
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.4e-44 182.6 141 73.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 7.2e-41 171.0 157 66.2
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 7.4e-38 161.0 158 63.3
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 6.3e-37 157.9 157 62.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.4e-36 156.8 157 61.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 2.0e-35 152.9 157 56.7
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.7e-34 149.8 176 52.8
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.1e-33 147.1 166 53.0
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 8.0e-32 141.0 157 51.0
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.0e-31 140.6 161 55.9
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 8.8e-31 137.5 155 55.5
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.2e-29 132.9 175 50.9
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.7e-29 132.1 155 54.2
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 3.1e-28 129.0 157 46.5
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 3.5e-27 125.6 163 52.8
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.9e-26 122.5 163 52.1
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.5e-26 121.3 162 50.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-25 120.6 177 51.4
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 3.2e-25 119.0 147 53.7
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 8.8e-23 110.9 188 46.3
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.2e-22 110.5 149 49.0
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.6e-22 109.4 156 39.1
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 3.4e-22 109.0 135 54.1
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 4.4e-22 108.6 159 46.5
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.7e-21 106.7 156 43.6
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 6.3e-21 104.8 173 47.4
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 6.3e-21 104.8 152 49.3
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.1e-20 104.0 150 50.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.4e-20 103.6 174 46.6
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.8e-20 103.2 154 39.0
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.4e-20 102.8 138 52.2
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.6e-19 100.1 174 40.8
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.0e-19 99.8 173 42.2
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.7e-19 99.4 160 48.8
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 4.5e-19 98.6 155 47.1
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.7e-18 96.7 142 43.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 2.3e-18 96.3 150 48.7
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.3e-18 96.3 127 51.2
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 2.9e-18 95.9 145 49.0
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.0e-18 95.1 152 42.1
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 8.6e-18 94.4 151 43.7
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 8.6e-18 94.4 142 45.8
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.1e-17 94.0 152 46.1
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.9e-17 93.2 156 46.8
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.5e-17 92.8 156 46.2
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 3.3e-17 92.4 148 46.6
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.2e-17 92.0 124 46.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.2e-17 91.3 156 46.2
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 9.5e-17 90.9 141 41.8
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.6e-16 90.1 174 36.8
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.6e-16 90.1 133 43.6
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.6e-16 90.1 156 46.2
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 2.1e-16 89.7 204 39.7
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 8.0e-16 87.8 228 36.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.0e-15 87.4 130 44.6
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.4e-15 87.0 169 39.6
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.4e-15 87.0 167 43.7
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.4e-15 87.0 152 47.4
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.8e-15 86.7 159 43.4
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.8e-15 86.7 151 43.7
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.0e-15 85.9 56 58.9
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.0e-15 85.5 54 61.1
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 5.2e-15 85.1 153 43.8
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 6.8e-15 84.7 148 39.2
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 8.9e-15 84.3 158 45.6
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.9e-15 84.3 140 42.1
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 8.9e-15 84.3 117 40.2
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 8.9e-15 84.3 216 34.7
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-14 84.0 168 42.3
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.2e-14 84.0 163 44.8
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.2e-14 84.0 149 42.3
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.5e-14 83.6 176 39.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.5e-14 83.6 172 43.0
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 2.0e-14 83.2 119 49.6
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.0e-14 83.2 54 61.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.0e-14 83.2 54 61.1
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.6e-14 82.8 151 39.7
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 2.6e-14 82.8 176 40.9
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.4e-14 82.4 125 50.4
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 3.4e-14 82.4 178 39.9
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.4e-14 82.4 126 40.5
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 5.7e-14 81.6 216 34.3
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.5e-14 81.3 226 34.5
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.3e-13 80.5 157 36.9
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.7e-13 80.1 56 55.4
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 2.2e-13 79.7 113 46.9
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.8e-13 79.3 168 40.5
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 2.8e-13 79.3 202 30.2
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.9e-13 78.6 153 40.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.9e-13 78.6 128 46.9
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 4.9e-13 78.6 53 52.8
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 6.3e-13 78.2 72 58.3
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 8.3e-13 77.8 54 51.9
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 8.3e-13 77.8 54 51.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 8.3e-13 77.8 54 51.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 8.3e-13 77.8 54 51.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 8.3e-13 77.8 54 51.9
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.3e-13 77.8 128 46.1
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 8.3e-13 77.8 174 38.5
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 8.3e-13 77.8 128 46.1
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 8.3e-13 77.8 128 46.1
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 8.3e-13 77.8 128 43.0
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.4e-12 77.0 113 43.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 1.8e-12 76.6 54 50.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 1.8e-12 76.6 54 50.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 2.4e-12 76.3 54 50.0
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 2.4e-12 76.3 54 50.0
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.4e-12 76.3 54 50.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 2.4e-12 76.3 54 50.0
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.1e-12 75.9 173 38.7
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 3.1e-12 75.9 118 37.3
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.1e-12 75.5 127 48.0
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.1e-12 75.5 123 43.9
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 7.0e-12 74.7 130 36.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.0e-12 74.7 157 35.7
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 7.0e-12 74.7 48 56.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-11 73.9 54 48.1
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-11 73.9 54 48.1
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.2e-11 73.9 54 48.1
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.2e-11 73.9 54 48.1
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.6e-11 73.6 157 43.9
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.6e-11 73.6 48 56.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 2.0e-11 73.2 139 42.4
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.7e-11 72.8 48 54.2
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 2.7e-11 72.8 48 56.2
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 3.5e-11 72.4 140 43.6
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 3.5e-11 72.4 191 28.3
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 3.5e-11 72.4 145 38.6
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 4.5e-11 72.0 48 54.2
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 5.9e-11 71.6 156 37.8
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 7.8e-11 71.2 54 48.1
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 7.8e-11 71.2 117 39.3
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 7.8e-11 71.2 53 50.9
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.0e-10 70.9 162 37.0
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.8e-10 68.9 49 53.1
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 5.0e-10 68.6 160 41.2
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 8.6e-10 67.8 143 33.6
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 8.6e-10 67.8 143 33.6
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.9e-09 66.6 53 45.3
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.5e-09 66.2 113 40.7
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 7.3e-09 64.7 46 54.3
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 7.3e-09 64.7 51 45.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 9.5e-09 64.3 54 42.6
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 9.5e-09 64.3 47 55.3
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.2e-08 63.9 132 37.9
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 1.4e-07 60.5 113 33.6
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-07 60.1 53 45.3
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 4.0e-07 58.9 44 45.5
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 8.9e-07 57.8 51 39.2
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 3.4e-06 55.8 43 53.5


User provided reference genes

Program Settings