Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.2e-67 260.0 155 100.0
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.2e-67 260.0 155 100.0
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 4.6e-24 115.2 96 69.8
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 4.6e-24 115.2 76 89.5
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 3.9e-23 112.1 81 82.7
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 3.9e-23 112.1 72 87.5
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 8.7e-23 110.9 90 72.2
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 8.7e-23 110.9 76 85.5
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.5e-22 110.2 72 86.1
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 1.9e-22 109.8 72 86.1
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.5e-22 109.4 81 81.5
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.5e-22 109.4 90 72.2
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.5e-22 109.4 92 73.9
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 3.3e-22 109.0 91 73.6
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 3.3e-22 109.0 76 84.2
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.3e-22 108.6 78 79.5
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 4.3e-22 108.6 90 71.1
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 5.7e-22 108.2 74 83.8
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 5.7e-22 108.2 72 84.7
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.7e-22 108.2 71 85.9
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.7e-22 108.2 71 85.9
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 5.7e-22 108.2 90 71.1
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 5.7e-22 108.2 71 85.9
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 9.6e-22 107.5 74 81.1
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 9.6e-22 107.5 75 82.7
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 9.6e-22 107.5 90 68.9
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.3e-21 107.1 75 81.3
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.3e-21 107.1 74 85.1
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.6e-21 106.7 90 71.1
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.6e-21 106.7 75 81.3
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.6e-21 106.7 73 83.6
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 2.1e-21 106.3 74 82.4
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 2.1e-21 106.3 74 82.4
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 2.1e-21 106.3 81 79.0
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 2.8e-21 105.9 92 70.7
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.8e-21 105.9 72 83.3
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 2.8e-21 105.9 72 83.3
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.8e-21 105.9 90 72.2
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.8e-21 105.9 90 72.2
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.7e-21 105.5 81 77.8
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 3.7e-21 105.5 81 77.8
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.7e-21 105.5 81 77.8
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.7e-21 105.5 90 72.2
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.8e-21 105.1 90 72.2
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 4.8e-21 105.1 74 82.4
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 6.2e-21 104.8 76 80.3
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 6.2e-21 104.8 76 80.3
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 6.2e-21 104.8 76 80.3
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 6.2e-21 104.8 76 80.3
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 6.2e-21 104.8 76 80.3
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 6.2e-21 104.8 90 70.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 6.2e-21 104.8 67 89.6
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 8.2e-21 104.4 69 87.0
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 8.2e-21 104.4 69 85.5
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 8.2e-21 104.4 81 79.0
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 8.2e-21 104.4 69 85.5
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 8.2e-21 104.4 69 85.5
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 8.2e-21 104.4 90 70.0
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 8.2e-21 104.4 72 81.9
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 8.2e-21 104.4 75 80.0
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 8.2e-21 104.4 71 83.1
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 8.2e-21 104.4 71 83.1
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 8.2e-21 104.4 91 70.3
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 8.2e-21 104.4 72 81.9
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.1e-20 104.0 72 81.9
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.1e-20 104.0 90 67.8
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 1.1e-20 104.0 81 76.5
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.4e-20 103.6 81 76.5
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.4e-20 103.6 81 76.5
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.4e-20 103.6 68 86.8
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.4e-20 103.6 81 76.5
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 1.8e-20 103.2 72 81.9
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.8e-20 103.2 90 67.8
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.8e-20 103.2 81 76.5
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.8e-20 103.2 72 80.6
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.8e-20 103.2 81 75.3
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.8e-20 103.2 67 88.1
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.8e-20 103.2 67 88.1
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.4e-20 102.8 67 88.1
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.4e-20 102.8 67 88.1
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 2.4e-20 102.8 72 81.9
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.4e-20 102.8 74 79.7
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.4e-20 102.8 72 81.9
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 3.1e-20 102.4 69 84.1
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 3.1e-20 102.4 67 86.6
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 3.1e-20 102.4 72 80.6
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 3.1e-20 102.4 69 84.1
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 4.0e-20 102.1 81 80.2
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 4.0e-20 102.1 76 80.3
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 4.0e-20 102.1 72 83.3
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 4.0e-20 102.1 90 70.0
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.3e-20 101.7 69 84.1
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 5.3e-20 101.7 72 84.7
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.3e-20 101.7 68 85.3
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 5.3e-20 101.7 90 67.8
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 6.9e-20 101.3 67 86.6
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 6.9e-20 101.3 67 86.6
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 6.9e-20 101.3 90 66.7
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 6.9e-20 101.3 68 85.3
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 6.9e-20 101.3 90 65.6
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 6.9e-20 101.3 69 82.6
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 9.0e-20 100.9 67 86.6
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 9.0e-20 100.9 67 86.6
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 9.0e-20 100.9 69 82.6
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.5e-19 100.1 67 85.1
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.5e-19 100.1 67 85.1
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.5e-19 100.1 67 85.1
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 2.0e-19 99.8 90 66.7
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 2.0e-19 99.8 69 84.1
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 3.4e-19 99.0 69 81.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 3.4e-19 99.0 67 83.6
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 3.4e-19 99.0 67 83.6
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.4e-19 99.0 67 83.6
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 3.4e-19 99.0 67 83.6
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 3.4e-19 99.0 67 83.6
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 3.4e-19 99.0 67 83.6
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.4e-19 99.0 71 80.3
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-19 99.0 69 81.2
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-19 99.0 69 81.2
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.5e-19 98.6 72 77.8
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 4.5e-19 98.6 72 77.8
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 4.5e-19 98.6 71 81.7
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 4.5e-19 98.6 71 81.7
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 5.8e-19 98.2 91 67.0
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 7.6e-19 97.8 67 83.6
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 7.6e-19 97.8 67 83.6
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 7.6e-19 97.8 67 83.6
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 7.6e-19 97.8 69 79.7
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 7.6e-19 97.8 69 81.2
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.3e-18 97.1 69 79.7
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.2e-18 96.3 74 77.0
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.9e-18 95.9 69 78.3
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.9e-17 93.2 91 64.8
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 2.5e-17 92.8 66 81.8
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 9.3e-17 90.9 66 80.3
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 4.6e-16 88.6 78 71.8
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 7.9e-16 87.8 69 73.9
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 8.7e-15 84.3 67 73.1
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.5e-14 83.6 66 75.8
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 4.3e-14 82.0 90 56.7
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 7.4e-14 81.3 66 72.7
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 7.4e-14 81.3 66 72.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 9.7e-14 80.9 69 69.6
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 2.2e-13 79.7 64 73.4
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.2e-13 79.7 66 71.2
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 8.2e-13 77.8 82 59.8
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 1.8e-12 76.6 58 81.0
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 2.4e-12 76.3 83 60.2
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 4.5e-11 72.0 58 70.7
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.3e-10 70.5 52 84.6
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.3e-10 70.5 47 80.9
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 3.2e-09 65.9 64 62.5
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.9e-07 58.9 49 75.5


User provided reference genes

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