Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.8e-207 725.7 375 100.0
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.4e-191 672.9 376 92.3
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.5e-185 652.1 409 85.3
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.4e-175 619.8 372 86.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.4e-175 619.8 373 86.1
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.5e-174 616.3 372 86.0
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 6.5e-173 610.9 364 87.1
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.8e-170 602.8 371 86.0
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 6.1e-163 577.8 338 87.9
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 8.5e-157 557.4 335 83.6
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 4.2e-156 555.1 335 84.8
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.6e-155 552.0 335 84.2
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 6.1e-155 551.2 335 82.7
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.4e-154 550.1 335 82.7
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 8.8e-154 547.4 335 81.8
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.6e-153 545.8 335 83.9
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 5.7e-153 544.7 351 78.6
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 5.7e-153 544.7 352 78.4
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 5.7e-153 544.7 338 81.1
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 9.7e-153 543.9 335 83.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 4.8e-152 541.6 331 82.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.1e-151 540.4 334 82.3
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.4e-151 540.0 335 81.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 1.8e-151 539.7 350 78.3
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.4e-151 539.3 335 82.4
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 4.1e-151 538.5 348 77.9
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 7.0e-151 537.7 364 75.3
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 9.1e-151 537.3 338 81.1
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.2e-150 537.0 348 77.9
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 3.5e-150 535.4 335 80.6
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.5e-150 535.0 313 85.6
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.0e-149 533.9 328 82.9
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.0e-149 533.9 338 81.1
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.2e-149 532.7 332 80.7
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.2e-149 532.7 332 80.7
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.1e-148 530.4 335 80.9
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.5e-148 530.0 361 75.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 5.5e-148 528.1 336 80.4
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 5.5e-148 528.1 335 80.6
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 9.4e-148 527.3 332 79.8
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.7e-147 525.8 337 79.5
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.7e-147 525.8 348 78.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 3.6e-147 525.4 337 79.2
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 4.7e-147 525.0 344 77.9
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.4e-146 523.5 335 80.3
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.8e-146 523.1 336 79.5
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.3e-146 522.7 354 76.3
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.3e-146 522.7 361 74.8
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 3.0e-146 522.3 355 76.6
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.0e-146 521.9 347 79.3
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.0e-146 521.9 354 75.7
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 4.0e-146 521.9 349 77.4
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 4.0e-146 521.9 372 72.0
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 5.2e-146 521.5 331 79.8
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-145 519.6 336 79.2
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 3.4e-145 518.8 329 80.5
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 4.4e-145 518.5 337 78.6
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 5.7e-145 518.1 317 82.6
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 7.5e-145 517.7 337 78.3
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 7.5e-145 517.7 337 78.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 7.5e-145 517.7 335 80.6
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 9.8e-145 517.3 379 71.2
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 9.8e-145 517.3 330 79.1
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.3e-144 516.9 337 78.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 2.2e-144 516.2 365 72.3
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.8e-144 515.8 335 77.6
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 2.8e-144 515.8 335 80.0
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 2.8e-144 515.8 396 69.9
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.1e-143 513.8 335 77.3
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.4e-143 513.5 317 80.1
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.7e-142 509.2 335 77.0
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.3e-141 506.9 311 81.7
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 9.5e-140 500.7 313 80.5
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 4.7e-139 498.4 317 80.4
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 2.3e-138 496.1 311 80.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 3.0e-138 495.7 311 80.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.5e-137 493.4 302 83.4
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 6.3e-136 488.0 313 77.6
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.1e-135 487.3 372 67.2
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.8e-135 486.5 364 72.3
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.8e-135 486.5 302 81.5
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 4.1e-135 485.3 335 74.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 2.0e-134 483.0 373 71.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.0e-134 483.0 379 68.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.0e-133 480.7 338 71.9
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 9.5e-132 474.2 349 73.1
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.3e-130 469.5 402 63.2
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 4.0e-130 468.8 287 83.6
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 5.8e-129 464.9 337 73.6
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.7e-128 463.4 307 76.9
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.9e-128 462.6 289 81.0
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.0e-126 456.4 280 82.5
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.0e-125 454.1 330 72.1
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.5e-124 450.3 338 67.8
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 2.5e-124 449.5 282 78.7
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.8e-123 446.0 280 81.1
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 2.0e-121 439.9 331 71.3
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 1.4e-119 433.7 329 70.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.2e-115 418.3 217 96.8
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 6.8e-114 414.8 314 67.5
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 4.3e-108 395.6 298 66.1
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.7e-107 392.1 242 83.1
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 6.2e-107 391.7 334 61.4
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.1e-103 380.9 255 74.1
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.1e-98 364.4 221 84.6
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.1e-86 323.6 305 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.9e-80 303.1 230 65.7
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 4.9e-80 302.4 307 54.1
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 2.5e-79 300.1 308 54.5
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 2.7e-78 296.6 192 78.6
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.3e-76 289.7 187 77.5
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 8.2e-75 285.0 220 66.8
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 5.0e-72 275.8 212 66.0
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 3.0e-69 266.5 167 81.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 7.4e-68 261.9 335 48.7
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.9e-61 239.6 151 78.8
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 4.1e-58 229.6 286 47.9
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 6.7e-53 212.2 160 69.4
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 8.2e-51 205.3 144 71.5
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 4.2e-47 193.0 115 86.1
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.7e-43 181.0 242 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.1e-42 176.4 167 55.1
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.1e-39 168.3 123 66.7
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.4e-37 161.4 110 69.1
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.8e-37 161.0 265 40.4
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.2e-35 154.1 281 35.2
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 7.7e-33 145.6 140 61.4
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.0e-32 145.2 263 37.6
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 2.2e-32 144.1 101 80.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.0e-29 133.3 88 73.9
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 2.6e-28 130.6 81 84.0
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 7.5e-20 102.4 114 52.6
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 6.4e-19 99.4 108 53.7
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.2e-18 97.1 70 72.9
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 5.4e-18 96.3 54 81.5
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 9.2e-18 95.5 88 61.4
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.7e-17 94.0 59 83.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.6e-17 93.2 62 72.6
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 1.6e-14 84.7 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.9e-11 73.9 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.0e-10 69.3 75 50.7
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 3.3e-07 60.5 84 44.0


User provided reference genes

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