Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 5.7e-217 757.7 494 100.0
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 5.1e-93 345.9 590 46.3
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-60 238.0 247 52.6
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.2e-59 234.2 531 34.5
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.7e-59 233.4 511 45.6
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.6e-54 216.9 510 42.7
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 3.0e-53 213.8 527 46.5
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.1e-50 203.8 224 51.3
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.1e-50 203.8 297 43.4
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.0e-44 184.5 234 48.3
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 3.4e-44 183.7 172 54.1
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.3e-43 181.8 239 46.0
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 4.9e-43 179.9 225 45.8
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.4e-34 151.8 238 38.7
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 4.6e-33 146.7 238 37.8
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-32 145.6 469 34.1
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-32 145.6 469 34.1
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 9.9e-20 102.4 207 35.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 8.4e-19 99.4 225 34.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.4e-18 98.6 180 33.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 7.1e-18 96.3 168 35.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 2.7e-17 94.4 145 39.3
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 6.6e-16 89.7 158 35.4
Medtr1g026760 Medicago truncatula HOM05D006236 ORTHO05D003486 8.7e-16 89.4 98 51.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.1e-15 89.0 108 43.5
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.5e-15 88.6 161 31.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 3.3e-15 87.4 161 32.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 3.3e-15 87.4 109 40.4
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.1e-14 84.7 159 36.5
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.8e-14 84.3 182 34.1
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 4.8e-14 83.6 164 34.1
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 6.2e-14 83.2 109 38.5
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 1.4e-13 82.0 370 42.4
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 3.1e-13 80.9 158 34.2
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 5.3e-13 80.1 149 36.2
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 6.9e-13 79.7 106 37.7
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 6.9e-13 79.7 122 38.5
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.9e-13 79.7 160 33.8
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 6.9e-13 79.7 166 31.3
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.2e-12 79.0 165 33.9
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 2.6e-12 77.8 158 31.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.4e-12 77.4 205 31.2
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.4e-12 77.0 158 32.3
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 4.4e-12 77.0 164 32.3
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 4.4e-12 77.0 110 37.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 7.6e-12 76.3 110 39.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 9.9e-12 75.9 160 31.2
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 1.3e-11 75.5 164 31.7
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 2.2e-11 74.7 158 33.5
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.2e-11 74.7 148 33.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.9e-11 74.3 138 35.5
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.9e-11 74.3 165 30.3
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 3.8e-11 73.9 171 31.6
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.9e-11 73.6 184 28.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 4.9e-11 73.6 168 32.7
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.9e-11 73.6 204 29.4
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.9e-11 73.6 112 37.5
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.9e-11 73.6 172 29.1
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 6.4e-11 73.2 113 38.1
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 6.4e-11 73.2 118 32.2
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 8.4e-11 72.8 147 34.0
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.1e-10 72.4 114 36.8
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.1e-10 72.4 112 39.3
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-10 72.4 110 34.5
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.4e-10 72.0 109 37.6
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.4e-10 72.0 128 32.8
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.9e-10 71.6 106 36.8
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 2.4e-10 71.2 161 32.9
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.4e-10 71.2 107 32.7
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 3.2e-10 70.9 169 33.7
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.2e-10 70.9 111 34.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 4.2e-10 70.5 197 27.9
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.2e-10 70.5 109 33.9
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 4.2e-10 70.5 195 29.2
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.2e-10 70.5 148 33.1
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.2e-10 70.5 148 33.1
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 5.4e-10 70.1 197 28.4
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 7.1e-10 69.7 197 27.9
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 7.1e-10 69.7 155 31.0
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.3e-10 69.3 120 30.8
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.2e-09 68.9 107 33.6
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.1e-09 68.2 207 28.0
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.1e-09 68.2 254 26.8
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.7e-09 67.8 155 30.3
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.7e-09 67.8 155 30.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 2.7e-09 67.8 145 33.1
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.6e-09 67.0 135 34.1
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 4.6e-09 67.0 141 34.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 4.6e-09 67.0 141 34.0
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 4.6e-09 67.0 179 31.8
TPR.G39827 Trifolium pratense HOM05D006236 ORTHO05D003486 4.6e-09 67.0 104 38.5
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.0e-09 66.6 113 35.4
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 6.0e-09 66.6 109 36.7
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.0e-08 65.9 205 27.3
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.0e-08 65.9 109 32.1
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.3e-08 65.5 136 33.1
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.7e-08 65.1 195 29.7
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.3e-08 64.7 134 35.1
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 2.3e-08 64.7 171 30.4
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.3e-08 64.7 105 35.2
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 2.3e-08 64.7 206 28.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.3e-08 64.7 111 31.5
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.3e-08 64.7 111 31.5
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 3.0e-08 64.3 189 31.2
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.0e-08 64.3 109 40.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 5.1e-08 63.5 153 32.7
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.1e-08 63.5 216 28.7
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 6.6e-08 63.2 164 29.9
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-08 63.2 117 36.8
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.1e-07 62.4 111 33.3
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.1e-07 62.4 107 34.6
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.5e-07 62.0 141 29.8
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.5e-07 62.0 208 25.5
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.9e-07 61.6 107 32.7
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.5e-07 61.2 133 35.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 2.5e-07 61.2 107 38.3
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.5e-07 61.2 110 36.4
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.5e-07 61.2 109 33.0
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 2.5e-07 61.2 101 38.6
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 4.3e-07 60.5 151 28.5
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 4.3e-07 60.5 139 33.8
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.6e-07 60.1 89 41.6
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 5.6e-07 60.1 117 32.5
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.6e-07 60.1 111 33.3
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 7.3e-07 59.7 117 28.2
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 7.3e-07 59.7 159 25.8
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 9.6e-07 59.3 133 34.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 9.6e-07 59.3 139 31.7
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 9.6e-07 59.3 139 31.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.6e-07 59.3 123 31.7
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.3e-06 58.9 174 29.3
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 1.3e-06 58.9 109 33.0
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.3e-06 58.9 130 26.9
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.6e-06 58.5 143 33.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.6e-06 58.5 167 29.3
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.6e-06 58.5 110 28.2
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.6e-06 58.5 110 28.2
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.1e-06 58.2 107 32.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.1e-06 58.2 89 37.1
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 2.8e-06 57.8 50 44.0
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 2.8e-06 57.8 168 25.6
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.6e-06 57.4 105 33.3
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 3.6e-06 57.4 99 33.3
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 3.6e-06 57.4 105 33.3
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.8e-06 57.0 148 28.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.8e-06 57.0 143 28.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 4.8e-06 57.0 101 31.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 8.1e-06 56.2 111 31.5
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 8.1e-06 56.2 250 24.8
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 8.1e-06 56.2 92 34.8


User provided reference genes

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