Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.3e-218 763.1 481 100.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.0e-93 348.2 590 46.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 8.9e-58 228.8 497 37.8
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.4e-55 220.7 547 33.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 6.6e-53 212.6 288 45.1
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-47 195.3 518 35.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-42 177.6 571 34.9
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-36 158.3 160 50.6
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.9e-36 157.9 159 52.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.6e-35 154.8 494 30.6
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.4e-34 151.0 402 38.6
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.4e-34 151.0 402 38.6
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.7e-32 144.8 159 49.7
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 2.1e-30 137.9 116 57.8
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 8.7e-29 132.5 167 45.5
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.4e-23 115.2 161 41.0
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 9.3e-23 112.5 161 40.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 3.1e-18 97.4 111 47.7
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.3e-16 92.0 122 39.3
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.3e-16 92.0 157 35.0
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.7e-16 91.7 159 34.6
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.7e-14 84.3 109 38.5
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.7e-14 84.3 160 35.0
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 2.7e-14 84.3 113 39.8
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.5e-14 84.0 159 33.3
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 4.6e-14 83.6 154 31.2
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 4.6e-14 83.6 154 31.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 4.6e-14 83.6 154 31.2
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 7.9e-14 82.8 154 31.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 7.9e-14 82.8 154 31.2
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.9e-14 82.8 157 31.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.0e-13 82.4 154 31.2
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.0e-13 82.4 108 42.6
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.3e-13 81.3 154 31.8
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 6.7e-13 79.7 109 36.7
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.1e-12 79.0 159 30.2
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.9e-12 78.2 154 31.2
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.3e-12 77.4 156 32.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 3.3e-12 77.4 156 28.8
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 5.7e-12 76.6 159 29.6
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 5.7e-12 76.6 122 37.7
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 7.4e-12 76.3 109 35.8
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.6e-11 75.1 154 29.2
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.1e-11 74.7 159 32.1
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.1e-11 74.7 110 36.4
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.1e-11 74.7 157 29.9
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 2.8e-11 74.3 158 32.3
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.8e-11 74.3 162 31.5
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 3.7e-11 73.9 104 37.5
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 3.7e-11 73.9 109 35.8
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 4.8e-11 73.6 106 33.0
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 4.8e-11 73.6 163 31.3
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 6.3e-11 73.2 158 29.1
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 6.3e-11 73.2 110 36.4
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.3e-11 73.2 162 30.9
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 8.2e-11 72.8 135 35.6
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 8.2e-11 72.8 127 33.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.1e-10 72.4 159 30.8
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.1e-10 72.4 142 34.5
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.4e-10 72.0 142 31.7
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.4e-10 72.0 107 36.4
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.4e-10 72.0 153 32.0
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.8e-10 71.6 111 34.2
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.8e-10 71.6 109 35.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.1e-10 70.5 150 32.0
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 4.1e-10 70.5 146 34.2
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.1e-10 70.5 132 31.1
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.1e-10 70.5 147 31.3
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 5.3e-10 70.1 102 35.3
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.3e-10 70.1 166 30.1
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 6.9e-10 69.7 160 30.6
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 6.9e-10 69.7 106 35.8
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 9.0e-10 69.3 159 29.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.2e-09 68.9 140 33.6
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 1.2e-09 68.9 148 31.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.5e-09 68.6 137 32.1
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.5e-09 68.6 141 31.9
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.5e-09 68.6 137 32.1
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.0e-09 68.2 107 31.8
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.6e-09 67.8 109 32.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.4e-09 67.4 134 34.3
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.4e-09 67.4 157 29.3
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 3.4e-09 67.4 109 31.2
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.4e-09 67.4 110 32.7
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.4e-09 67.4 132 30.3
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 4.5e-09 67.0 124 31.5
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.5e-09 67.0 109 32.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.9e-09 66.6 110 37.3
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.9e-09 66.6 131 29.8
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 7.6e-09 66.2 153 30.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 7.6e-09 66.2 137 33.6
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 7.6e-09 66.2 129 31.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.0e-08 65.9 153 32.0
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.0e-08 65.9 107 31.8
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.0e-08 65.9 109 32.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.3e-08 65.5 100 37.0
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.3e-08 65.5 110 33.6
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.7e-08 65.1 120 29.2
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.7e-08 65.1 145 31.0
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 1.7e-08 65.1 84 50.0
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.2e-08 64.7 148 30.4
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.2e-08 64.7 112 34.8
Medtr1g026760 Medicago truncatula HOM05D006236 ORTHO05D003486 2.2e-08 64.7 61 57.4
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-08 64.7 122 28.7
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-08 64.7 111 33.3
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.2e-08 64.7 103 35.0
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.9e-08 64.3 111 33.3
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 2.9e-08 64.3 114 35.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 3.8e-08 63.9 105 34.3
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 5.0e-08 63.5 111 32.4
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.0e-08 63.5 101 36.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 5.0e-08 63.5 111 32.4
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 5.0e-08 63.5 111 32.4
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 5.0e-08 63.5 107 33.6
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.0e-08 63.5 111 29.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 5.0e-08 63.5 111 29.7
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 6.5e-08 63.2 107 37.4
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 6.5e-08 63.2 159 30.2
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 8.4e-08 62.8 156 28.8
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.1e-07 62.4 107 32.7
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.1e-07 62.4 112 34.8
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.1e-07 62.4 172 26.7
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.4e-07 62.0 105 32.4
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.9e-07 61.6 111 31.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.5e-07 61.2 167 28.7
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.2e-07 60.8 113 29.2
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 4.2e-07 60.5 53 45.3
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 4.2e-07 60.5 109 31.2
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 4.2e-07 60.5 114 30.7
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.5e-07 60.1 135 28.9
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 5.5e-07 60.1 135 28.9
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 7.2e-07 59.7 111 30.6
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 7.2e-07 59.7 111 30.6
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 9.3e-07 59.3 100 38.0
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 9.3e-07 59.3 108 32.4
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 9.3e-07 59.3 108 36.1
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 9.3e-07 59.3 51 45.1
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 9.3e-07 59.3 107 31.8
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.6e-06 58.5 112 33.9
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-06 58.2 132 28.8
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.1e-06 58.2 138 31.9
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.7e-06 57.8 141 27.0
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.7e-06 57.8 141 27.0
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.5e-06 57.4 105 31.4
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.5e-06 57.4 105 31.4
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 4.6e-06 57.0 101 34.7
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 6.1e-06 56.6 141 27.0
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 6.1e-06 56.6 113 30.1
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 7.9e-06 56.2 99 30.3
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 7.9e-06 56.2 130 27.7
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 7.9e-06 56.2 100 32.0


User provided reference genes

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