Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 8.2e-86 320.5 175 100.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 5.7e-71 271.2 185 85.4
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.3e-70 270.0 180 85.0
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.3e-67 260.0 174 85.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.3e-51 206.8 180 70.0
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.5e-50 203.4 178 65.2
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.5e-50 203.4 179 64.8
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.9e-50 203.0 180 67.8
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.9e-50 203.0 180 67.8
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.9e-50 203.0 179 64.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.9e-50 203.0 175 64.6
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 4.2e-50 201.8 179 63.1
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 4.2e-50 201.8 180 67.2
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 8.3e-46 187.6 177 59.3
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 5.9e-44 181.4 170 58.8
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 7.7e-44 181.0 173 58.4
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.9e-43 179.1 166 60.2
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 2.1e-41 172.9 174 57.5
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.4e-40 170.2 172 55.8
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 3.0e-40 169.1 177 53.7
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.0e-39 166.4 172 54.1
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.6e-39 166.0 172 54.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 2.6e-39 166.0 173 56.6
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 7.5e-39 164.5 172 52.9
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 7.5e-39 164.5 173 53.8
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 7.5e-39 164.5 173 53.8
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 7.5e-39 164.5 173 53.8
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.5e-39 164.5 170 54.7
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 9.8e-39 164.1 173 54.9
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 1.7e-38 163.3 174 54.6
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 3.7e-38 162.2 178 53.4
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 2.4e-37 159.5 172 52.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.4e-37 159.5 172 51.7
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 7.0e-37 157.9 174 51.7
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.2e-36 157.1 161 54.0
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.2e-36 157.1 177 53.1
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.2e-36 157.1 178 53.4
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 2.7e-36 156.0 175 50.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 2.7e-36 156.0 174 52.3
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-35 153.7 176 50.6
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-35 153.7 176 50.6
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.3e-35 153.7 171 53.2
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.3e-35 153.7 181 51.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 8.6e-35 151.0 162 52.5
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.3e-34 149.1 158 53.8
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 4.3e-34 148.7 176 51.1
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.2e-33 147.1 177 48.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.1e-33 146.4 180 48.3
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 3.6e-33 145.6 176 52.3
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 4.7e-33 145.2 161 50.9
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.2e-33 144.8 180 47.2
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 8.0e-33 144.4 169 49.1
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.0e-32 144.1 180 48.3
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.4e-32 143.7 166 50.6
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.4e-32 143.7 174 49.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.8e-32 143.3 176 47.7
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 5.2e-32 141.7 170 50.6
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 1.2e-31 140.6 160 51.2
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 1.5e-31 140.2 180 50.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 2.0e-31 139.8 175 49.1
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 3.4e-31 139.0 177 46.9
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 5.8e-31 138.3 176 48.3
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 9.8e-31 137.5 176 50.0
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 9.8e-31 137.5 149 51.0
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.9e-30 136.0 154 48.7
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 3.7e-30 135.6 154 48.7
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.4e-30 134.8 172 46.5
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 8.3e-30 134.4 170 47.1
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-29 134.0 176 47.2
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.1e-29 134.0 171 46.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 5.4e-29 131.7 172 48.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 7.0e-29 131.3 160 51.2
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 1.6e-28 130.2 205 42.4
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 4.6e-28 128.6 168 47.0
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 4.6e-28 128.6 168 47.0
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 4.6e-28 128.6 168 47.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.9e-27 125.6 172 45.3
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.9e-27 125.6 215 40.9
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 3.9e-27 125.6 172 44.8
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 5.0e-27 125.2 173 49.1
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 5.0e-27 125.2 174 46.0
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 3.3e-26 122.5 157 46.5
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 9.5e-26 120.9 177 42.9
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.8e-25 119.4 158 46.8
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 4.7e-25 118.6 125 54.4
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 4.7e-25 118.6 172 44.8
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 6.2e-25 118.2 155 47.1
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 6.2e-25 118.2 155 47.1
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 1.4e-24 117.1 107 60.7
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 3.1e-24 115.9 173 45.1
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.5e-23 113.6 176 43.2
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.4e-23 112.5 172 43.6
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 4.4e-23 112.1 164 45.1
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.4e-23 112.1 178 42.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.5e-23 111.3 184 41.8
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.9e-22 109.4 173 41.0
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 3.7e-22 109.0 175 41.1
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.4e-21 107.1 174 43.1
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.9e-21 106.7 165 42.4
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.4e-21 106.3 152 42.8
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 3.2e-21 105.9 172 42.4
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.1e-21 105.5 217 35.5
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 5.4e-21 105.1 117 52.1
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 5.4e-21 105.1 173 42.2
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.6e-20 102.1 177 36.7
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 7.8e-20 101.3 175 38.9
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 3.0e-19 99.4 109 54.1
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 6.6e-19 98.2 181 41.4
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 8.6e-19 97.8 181 41.4
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.9e-18 96.7 176 36.4
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.5e-18 96.3 129 48.1
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.6e-17 93.6 186 38.2
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 3.6e-17 92.4 82 65.9
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 6.2e-17 91.7 104 52.9
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.1e-16 90.9 177 37.3
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.8e-16 90.1 178 37.6
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.3e-16 89.7 169 37.3
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 3.1e-16 89.4 178 37.6
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 2.0e-15 86.7 152 36.8
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 4.4e-15 85.5 153 43.1
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.4e-15 85.5 153 43.1
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 5.8e-15 85.1 174 35.6
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 8.4e-14 81.3 173 38.2
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.4e-13 79.7 174 36.2
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 4.1e-13 79.0 172 35.5
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 5.4e-13 78.6 109 46.8
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 7.1e-13 78.2 72 63.9
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 7.1e-13 78.2 72 63.9
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 9.2e-13 77.8 104 46.2
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 7.8e-12 74.7 126 42.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 3.9e-11 72.4 86 45.3
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 5.1e-11 72.0 70 64.3
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 6.6e-11 71.6 178 33.7
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.1e-10 70.9 180 34.4
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.5e-10 69.7 100 47.0
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.5e-10 69.7 100 47.0
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.5e-10 69.7 116 36.2
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 7.3e-10 68.2 174 32.8
arahy.Tifrunner.gnm1.ann1.MN077J Arachis hypogaea HOM05D030690 ORTHO05D006001 1.2e-09 67.4 57 70.2
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.2e-09 67.4 146 41.1
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 3.6e-09 65.9 122 39.3
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 4.7e-09 65.5 104 42.3
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.1e-08 64.3 64 50.0
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.2e-08 62.0 147 38.1
FAN07G1641 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.8e-08 61.6 153 36.6
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.9e-07 57.8 72 47.2


User provided reference genes

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