Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 4.9e-78 294.3 138 100.0
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 2.3e-59 232.3 123 87.8
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 5.9e-55 217.6 119 83.2
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.0e-50 202.6 123 74.8
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.1e-48 195.3 122 78.7
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.6e-47 192.2 123 72.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 2.6e-47 192.2 125 72.0
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.7e-46 189.5 125 72.0
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 9.4e-45 183.7 122 71.3
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 6.1e-44 181.0 125 71.2
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.8e-43 179.5 109 78.0
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 3.0e-43 178.7 109 75.2
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.0e-38 163.7 115 69.6
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 8.0e-36 154.1 114 62.3
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 8.0e-36 154.1 114 62.3
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.6e-31 139.8 108 63.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.0e-30 137.1 113 58.4
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.3e-30 136.0 136 53.7
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.9e-30 135.6 129 55.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.9e-30 135.6 129 55.8
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.9e-29 132.9 123 57.7
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-29 132.9 118 56.8
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.9e-29 132.9 117 56.4
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.2e-29 131.7 120 50.8
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 5.5e-29 131.3 112 56.2
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 7.2e-29 131.0 130 53.8
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.2e-28 130.2 120 58.3
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.6e-28 129.8 126 55.6
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.1e-28 129.4 117 56.4
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 6.1e-28 127.9 120 56.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.3e-27 125.9 117 53.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.3e-27 125.9 124 53.2
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.0e-27 125.6 120 51.7
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 3.0e-27 125.6 126 54.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 4.0e-27 125.2 123 52.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 5.2e-27 124.8 116 53.4
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 6.8e-27 124.4 137 48.2
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 6.8e-27 124.4 107 57.9
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.8e-27 124.4 107 57.9
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.8e-27 124.4 127 53.5
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 8.9e-27 124.0 100 63.0
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 1.2e-26 123.6 122 48.4
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.2e-26 123.6 137 47.4
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.2e-26 123.6 108 55.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 2.0e-26 122.9 99 59.6
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.0e-26 122.9 122 54.9
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.0e-26 122.9 108 57.4
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.6e-26 122.5 111 55.9
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.6e-26 122.5 127 52.8
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.6e-26 122.5 126 48.4
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.4e-26 122.1 120 55.8
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.4e-26 121.7 107 57.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 5.7e-26 121.3 122 50.8
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.5e-26 120.9 119 53.8
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 9.8e-26 120.6 116 54.3
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.7e-25 119.8 103 55.3
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.7e-25 119.8 106 56.6
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.7e-25 119.8 120 55.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.7e-25 119.8 126 50.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.7e-25 119.8 113 51.3
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.2e-25 119.4 128 51.6
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 2.2e-25 119.4 105 56.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 2.9e-25 119.0 119 52.1
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 4.9e-25 118.2 109 53.2
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.9e-25 118.2 107 56.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.9e-25 118.2 122 50.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 6.3e-25 117.9 103 55.3
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 8.3e-25 117.5 125 47.2
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 8.3e-25 117.5 124 50.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.3e-25 117.5 122 51.6
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 8.3e-25 117.5 118 49.2
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.1e-24 117.1 120 51.7
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 1.1e-24 117.1 119 49.6
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.4e-24 116.7 127 52.8
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.4e-24 116.7 105 54.3
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 2.4e-24 115.9 113 52.2
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.4e-24 115.9 128 47.7
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 3.2e-24 115.5 110 55.5
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 4.1e-24 115.2 110 53.6
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 5.4e-24 114.8 123 52.0
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 5.4e-24 114.8 65 75.4
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 7.0e-24 114.4 130 46.9
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.0e-24 114.4 126 48.4
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 9.2e-24 114.0 111 57.7
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.2e-23 113.6 104 55.8
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.2e-23 113.6 114 49.1
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.2e-23 113.6 91 60.4
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.2e-23 113.6 115 54.8
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.6e-23 113.2 102 51.0
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.6e-23 113.2 139 49.6
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.6e-23 113.2 111 55.0
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.0e-23 112.8 97 54.6
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 2.0e-23 112.8 97 54.6
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.0e-23 112.8 97 54.6
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.7e-23 112.5 63 77.8
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 2.7e-23 112.5 107 51.4
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 2.7e-23 112.5 107 51.4
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.7e-23 112.5 112 51.8
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.7e-23 112.5 118 52.5
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.7e-23 112.5 143 47.6
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 3.5e-23 112.1 162 43.2
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 4.6e-23 111.7 118 49.2
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 4.6e-23 111.7 112 54.5
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 7.8e-23 110.9 105 51.4
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 7.8e-23 110.9 94 64.9
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 7.8e-23 110.9 67 70.1
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 7.8e-23 110.9 111 54.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.7e-22 109.8 127 49.6
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.3e-22 109.4 118 48.3
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.5e-21 105.9 112 53.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.8e-20 102.4 56 80.4
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.4e-19 100.1 102 53.9
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.2e-19 98.2 110 48.2
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.2e-18 97.1 73 56.2
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.5e-18 96.7 54 75.9
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.0e-18 96.3 62 69.4
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 3.4e-18 95.5 97 55.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 3.4e-18 95.5 172 36.6
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 4.4e-18 95.1 51 76.5
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 5.8e-18 94.7 53 73.6
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 7.5e-18 94.4 125 43.2
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 9.8e-18 94.0 82 53.7
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.4e-16 90.1 99 52.5
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.4e-16 90.1 99 52.5
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.4e-16 90.1 72 63.9
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.1e-16 88.6 91 52.7
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.0e-16 87.8 92 54.3
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.2e-15 87.0 79 51.9
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.7e-15 85.9 134 38.8
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 3.5e-15 85.5 54 75.9
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.0e-14 84.0 89 47.2
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.0e-14 84.0 64 57.8
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.3e-14 82.8 96 47.9
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 8.6e-14 80.9 51 62.7
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 2.5e-13 79.3 40 77.5
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 3.3e-13 79.0 109 41.3
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 9.5e-13 77.4 90 50.0
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.2e-12 77.0 92 45.7
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 6.2e-12 74.7 44 72.7
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 6.8e-11 71.2 103 43.7
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 6.8e-11 71.2 49 61.2
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.2e-10 70.5 39 79.5
VMungo1215G2302 Vigna mungo HOM05D000509 ORTHO05D000466 2.0e-10 69.7 55 65.5
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 2.2e-09 66.2 82 47.6
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.1e-08 62.0 76 46.1
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 5.4e-08 61.6 129 32.6
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 4.6e-07 58.5 37 70.3


User provided reference genes

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