Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 0.0e+00 1234.9 621 100.0
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 5.8e-211 738.0 643 67.0
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 3.5e-208 728.8 652 66.6
Psat6g003040 Pisum sativum HOM05D007378 ORTHO05D007577 3.9e-191 672.2 548 70.4
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 1.5e-169 600.5 680 54.0
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 2.8e-157 559.7 709 51.2
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 9.1e-156 554.7 679 51.4
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 9.1e-156 554.7 698 51.0
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 2.8e-149 533.1 717 50.9
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 1.2e-139 501.1 722 47.9
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 1.6e-139 500.7 677 49.9
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 2.1e-112 410.6 671 46.6
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 3.2e-108 396.7 621 46.1
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 1.6e-107 394.4 614 45.1
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 1.1e-103 381.7 675 43.0
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 2.4e-103 380.6 648 44.8
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 2.0e-102 377.5 628 43.3
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 7.6e-102 375.6 655 41.1
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 4.6e-99 366.3 690 41.4
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 1.1e-97 361.7 652 42.5
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 1.1e-97 361.7 665 41.8
Lalb_Chr08g0246161 Lupinus albus HOM05D007378 ORTHO05D007577 4.8e-88 329.7 579 43.4
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 1.7e-61 241.5 720 32.1
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 1.9e-60 238.0 710 31.1
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 2.7e-59 234.2 684 31.9
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 9.1e-55 219.2 713 30.2
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 7.7e-54 216.1 715 30.6
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 2.1e-51 208.0 640 32.0
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 2.3e-50 204.5 735 30.7
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 3.0e-50 204.1 690 31.3
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 8.8e-50 202.6 645 31.6
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 3.7e-48 197.2 772 30.4
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.8e-47 194.9 654 32.1
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 4.1e-47 193.7 687 30.0
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 2.0e-46 191.4 633 31.0
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 2.7e-46 191.0 648 32.4
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 6.8e-42 176.4 700 29.6
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 1.3e-40 172.2 757 28.4
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 1.3e-40 172.2 589 29.7
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 1.3e-40 172.2 624 30.6
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.7e-40 171.8 746 28.7
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 3.7e-40 170.6 606 30.2
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 3.7e-40 170.6 653 30.9
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.4e-39 168.7 633 31.1
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 5.4e-39 166.8 719 29.8
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 1.6e-38 165.2 654 29.7
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 2.7e-38 164.5 630 29.2
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 7.7e-38 162.9 653 28.5
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 1.3e-37 162.2 712 28.1
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.7e-37 161.8 696 28.3
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 5.0e-37 160.2 659 31.0
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 4.2e-36 157.1 677 29.2
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 5.6e-36 156.8 629 30.7
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 2.1e-35 154.8 615 28.3
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 2.1e-35 154.8 631 29.5
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 1.4e-34 152.1 528 30.7
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 2.9e-32 144.4 671 27.6
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 1.1e-31 142.5 640 29.1
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 4.1e-31 140.6 520 29.0
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 5.9e-30 136.7 625 29.9
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 3.3e-28 131.0 627 28.7
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 5.6e-28 130.2 381 30.7
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 1.6e-27 128.6 710 28.7
TPR.G31883 Trifolium pratense HOM05D007378 ORTHO05D007577 4.7e-27 127.1 129 55.0
Rhsim07G0247100 Rhododendron simsii HOM05D007378 ORTHO05D007577 1.0e-26 125.9 681 27.6
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 2.6e-25 121.3 650 27.1
MBI05_g30742_MAGBIO Magnolia biondii HOM05D007378 ORTHO05D007577 2.6e-25 121.3 706 26.3
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 1.7e-24 118.6 697 25.3
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 6.4e-24 116.7 673 23.9
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 8.3e-24 116.3 327 32.4
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 1.1e-23 115.9 704 27.7
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 4.1e-23 114.0 603 26.9
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 7.8e-22 109.8 632 26.1
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 6.6e-21 106.7 635 25.8
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 1.5e-20 105.5 659 27.0
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 3.3e-20 104.4 496 25.8
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 9.5e-20 102.8 638 25.2
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 3.6e-19 100.9 282 31.6
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 3.6e-19 100.9 697 24.1
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 8.1e-19 99.8 602 26.6
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 1.8e-18 98.6 586 25.6
TPR.G31885 Trifolium pratense HOM05D001130 ORTHO05D013423 1.8e-18 98.6 78 69.2
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 5.2e-18 97.1 253 38.7
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 6.8e-18 96.7 568 24.8
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 8.9e-18 96.3 487 27.3
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 9.8e-17 92.8 540 26.9
AUR62033831 Chenopodium quinoa HOM05D007378 ORTHO05D007577 2.9e-16 91.3 683 25.2
Oeu020868.1 Olea europaea HOM05D007378 ORTHO05D007577 3.7e-16 90.9 546 24.5
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 6.4e-16 90.1 483 26.7
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 1.9e-15 88.6 657 24.8
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 3.2e-15 87.8 543 26.7
PSO170G0005 Papaver somniferum HOM05D007378 ORTHO05D007577 4.1e-15 87.4 551 26.0
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 9.2e-15 86.3 511 27.0
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 9.2e-15 86.3 294 33.7
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 2.1e-14 85.1 205 41.0
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 4.6e-14 84.0 542 26.6
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 4.6e-14 84.0 129 48.1
vmacro04350 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 4.6e-14 84.0 267 28.8
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 1.3e-13 82.4 534 26.4
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 1.1e-12 79.3 558 24.0
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 1.9e-12 78.6 471 25.5
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 2.5e-12 78.2 517 25.3
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 9.5e-12 76.3 543 25.2
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 1.1e-10 72.8 621 24.8
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 1.1e-10 72.8 313 29.7
TPR.G35411 Trifolium pratense HOM05D000001 ORTHO05D000003 3.1e-10 71.2 104 49.0
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 5.8e-09 67.0 103 47.6
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 9.9e-09 66.2 118 41.5
Lj4A25T50 Lonicera japonica HOM05D007378 ORTHO05D007577 1.7e-08 65.5 244 27.5
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 3.7e-08 64.3 107 43.9
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 1.9e-07 62.0 329 24.0


User provided reference genes

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