Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.1e-259 899.4 458 100.0
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 4.3e-227 791.2 463 88.8
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.1e-211 740.0 460 84.3
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 9.9e-208 726.9 420 89.5
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.1e-195 686.8 472 77.8
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 7.6e-192 674.1 468 76.9
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 8.4e-191 670.6 456 77.2
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 2.5e-190 669.1 470 76.4
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 3.3e-187 658.7 457 77.5
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.3e-186 656.8 449 77.7
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 2.2e-183 646.0 467 74.5
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 8.5e-183 644.0 467 74.5
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.4e-169 600.1 456 68.9
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 3.4e-168 595.5 461 69.4
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.9e-167 592.4 448 69.2
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 8.5e-167 590.9 452 68.1
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.4e-166 590.1 457 70.2
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 9.4e-166 587.4 452 67.9
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.2e-165 587.0 452 67.5
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.0e-164 583.9 458 68.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.1e-163 580.5 457 67.6
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 3.3e-163 578.9 453 68.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 5.7e-163 578.2 468 68.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 7.4e-163 577.8 504 64.7
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 9.7e-163 577.4 455 67.7
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 9.7e-163 577.4 451 66.5
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 1.3e-162 577.0 451 67.2
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.8e-162 575.9 452 65.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 8.2e-162 574.3 451 67.0
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.4e-161 573.5 488 66.0
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.8e-161 573.2 454 67.2
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 7.0e-161 571.2 451 67.6
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 5.9e-160 568.2 485 64.5
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 7.7e-160 567.8 451 66.7
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.7e-159 566.6 464 65.1
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 2.5e-158 562.8 460 65.0
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 5.5e-158 561.6 455 65.3
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 5.5e-158 561.6 452 65.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.6e-157 560.1 451 67.2
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 4.0e-156 555.4 461 65.1
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 8.8e-156 554.3 457 65.0
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.3e-155 552.4 455 65.9
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 5.7e-155 551.6 458 65.5
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.3e-154 550.4 457 63.9
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 2.8e-154 549.3 393 75.8
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.7e-154 548.9 467 62.7
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 4.8e-154 548.5 456 63.6
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 6.3e-154 548.1 450 64.4
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 8.2e-154 547.7 456 64.5
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 8.2e-154 547.7 456 63.6
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 3.1e-153 545.8 456 63.6
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 4.1e-153 545.4 454 63.0
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 5.3e-153 545.0 456 63.6
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.2e-152 543.9 456 62.7
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 2.0e-152 543.1 458 64.4
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 3.5e-152 542.3 456 63.8
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.3e-151 540.4 455 63.5
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 5.0e-151 538.5 435 67.1
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.9e-150 536.6 462 62.3
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 4.2e-150 535.4 480 61.0
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.0e-148 530.8 457 62.1
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.3e-148 529.6 459 61.2
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 2.0e-147 526.6 463 61.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 7.5e-147 524.6 459 62.5
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 7.5e-147 524.6 461 61.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.3e-146 523.9 456 61.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.7e-146 523.5 517 57.6
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 2.2e-146 523.1 452 61.9
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 3.7e-146 522.3 463 60.3
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 4.8e-146 521.9 436 63.8
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 9.1e-145 517.7 453 61.4
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.0e-144 516.5 464 60.3
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 3.5e-144 515.8 462 61.5
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.3e-143 513.8 457 59.5
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.3e-143 513.1 464 60.1
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 5.0e-143 511.9 465 60.6
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 5.5e-142 508.4 453 58.9
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 7.2e-142 508.1 465 60.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 9.5e-142 507.7 467 60.0
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.6e-141 506.9 306 87.3
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.8e-140 503.4 456 60.5
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.8e-140 503.4 517 54.7
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.0e-140 502.7 472 57.8
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 6.8e-140 501.5 466 59.9
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 6.8e-140 501.5 466 59.9
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.6e-139 499.6 459 59.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 5.7e-139 498.4 459 59.7
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.7e-138 496.9 466 60.1
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.2e-138 496.5 456 59.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.8e-138 496.1 427 61.4
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.8e-138 496.1 469 57.4
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 6.3e-138 495.0 454 59.5
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 8.3e-138 494.6 456 59.4
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 2.4e-137 493.0 461 59.4
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 5.9e-136 488.4 478 55.9
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.3e-135 486.5 459 58.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.9e-134 483.4 442 60.4
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 5.7e-131 471.9 466 57.3
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.7e-130 470.3 470 55.3
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.7e-130 469.2 394 64.0
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.1e-129 467.6 457 57.3
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.8e-129 466.8 481 54.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.0e-127 461.1 487 53.4
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.7e-127 460.3 458 57.6
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 5.0e-127 458.8 478 52.7
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 6.6e-127 458.4 451 57.9
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.9e-114 416.4 409 57.9
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 3.9e-111 406.0 465 49.0
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 3.8e-106 389.4 491 47.0
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.5e-102 376.7 303 68.0
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.1e-100 369.8 451 48.1
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.6e-99 366.7 383 55.9
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 7.6e-99 365.2 525 41.5
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.9e-97 360.5 478 44.6
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 4.5e-91 339.3 359 54.9
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 7.4e-86 322.0 325 54.5
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 5.5e-81 305.8 613 34.9
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.1e-65 255.0 538 35.5
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 7.7e-59 232.3 455 34.3
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.0e-58 231.9 477 35.2
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.8e-55 221.1 277 54.2
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 9.4e-49 198.7 502 30.7
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.3e-45 188.3 177 60.5
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.4e-44 184.9 250 48.4
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 6.5e-42 176.0 253 44.3
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 6.1e-24 116.3 203 42.4
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.0e-23 115.5 202 43.6
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.5e-22 111.7 117 51.3
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 3.4e-22 110.5 190 43.2
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.4e-20 104.4 77 66.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 5.6e-17 93.2 134 41.8
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.6e-16 91.7 70 58.6
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.8e-16 90.9 235 34.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.5e-14 85.1 101 48.5
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 2.6e-14 84.3 106 50.9
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 3.7e-13 80.5 108 50.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 6.0e-11 73.2 131 39.7
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 8.6e-10 69.3 92 50.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.9e-09 68.2 62 58.1
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 3.3e-09 67.4 92 48.9
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 8.0e-08 62.8 142 35.2
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 1.4e-07 62.0 113 39.8
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.1e-07 60.8 35 74.3
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 4.0e-07 60.5 34 79.4
FAN15G3305 Fragaria x ananassa HOM05D004999 ORTHO05D208423 5.8e-06 56.6 79 43.0


User provided reference genes

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