Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g024910 Medicago truncatula HOM05D000040 ORTHO05D267301 5.4e-113 411.0 206 100.0
TPR.G16287 Trifolium pratense HOM05D000086 ORTHO05D003081 2.3e-18 96.7 107 52.3
Medtr7g105850 Medicago truncatula HOM05D000040 ORTHO05D003752 5.0e-18 95.5 59 86.4
Medtr7g096690 Medicago truncatula HOM05D000086 ORTHO05D003081 5.6e-17 92.0 113 48.7
Psat3g058440 Pisum sativum HOM05D000086 ORTHO05D003081 6.2e-16 88.6 103 52.4
TPR.G23354 Trifolium pratense HOM05D000040 ORTHO05D003752 6.4e-13 78.6 127 46.5
Psat3g030000 Pisum sativum HOM05D000040 ORTHO05D003752 3.2e-12 76.3 87 52.9
QL07p037332 Quercus lobata HOM05D000040 ORTHO05D003752 1.9e-09 67.0 52 63.5
arahy.Tifrunner.gnm1.ann1.E45ZGM Arachis hypogaea HOM05D000040 ORTHO05D003752 3.3e-09 66.2 82 51.2
arahy.Tifrunner.gnm1.ann1.X039UN Arachis hypogaea HOM05D000040 ORTHO05D003752 3.3e-09 66.2 82 51.2
QL07p037308 Quercus lobata HOM05D000040 ORTHO05D003752 3.3e-09 66.2 52 63.5
MD12G1037600 Malus domestica HOM05D000040 ORTHO05D003752 4.3e-09 65.9 115 37.4
CsaV3_6G041050 Cucumis sativus L. HOM05D000040 ORTHO05D003752 2.1e-08 63.5 95 43.2
MD14G1036600 Malus domestica HOM05D000040 ORTHO05D003752 2.1e-08 63.5 115 35.7
Phvul.001G194500 Phaseolus vulgaris HOM05D000040 ORTHO05D003752 2.1e-08 63.5 52 59.6
TWI74G0713 Tripterygium wilfordii HOM05D000040 ORTHO05D003752 2.1e-08 63.5 111 45.0
Lalb_Chr20g0111431 Lupinus albus HOM05D000040 ORTHO05D003752 2.8e-08 63.2 53 64.2
Lsat_1_v5_gn_2_55360 Lactuca sativa HOM05D000040 ORTHO05D003752 4.7e-08 62.4 54 55.6
CiPaw.10G015900 Carya illinoinensis HOM05D000040 ORTHO05D003752 6.2e-08 62.0 50 62.0
RcHm_v2.0_Chr3g0475521 Rosa chinensis HOM05D000040 ORTHO05D003752 8.1e-08 61.6 86 41.9
VMungo1383G0789 Vigna mungo HOM05D000040 ORTHO05D003752 8.1e-08 61.6 98 40.8
Eucgr.A02601 Eucalyptus grandis HOM05D000040 ORTHO05D003752 1.1e-07 61.2 84 40.5
FAN02G3891 Fragaria x ananassa HOM05D000040 ORTHO05D003752 1.1e-07 61.2 95 42.1
FAN05G2552 Fragaria x ananassa HOM05D000040 ORTHO05D003752 1.1e-07 61.2 95 42.1
FAN05G2984 Fragaria x ananassa HOM05D000040 ORTHO05D003752 1.1e-07 61.2 95 42.1
Manes.08G032100 Manihot esculenta HOM05D000040 ORTHO05D003752 1.1e-07 61.2 58 53.4
QL07p037272 Quercus lobata HOM05D000040 ORTHO05D003752 1.1e-07 61.2 115 40.0
Lalb_Chr25g0288061 Lupinus albus HOM05D000040 ORTHO05D003752 1.4e-07 60.8 55 58.2
Peaxi162Scf00010g00342 Petunia axillaris HOM05D000040 ORTHO05D003752 1.4e-07 60.8 62 51.6
Oeu045035.1 Olea europaea HOM05D000040 ORTHO05D003752 1.8e-07 60.5 89 41.6
Oeu045036.1 Olea europaea HOM05D000040 ORTHO05D003752 1.8e-07 60.5 89 41.6
Prupe.7G097600 Prunus persica HOM05D000040 ORTHO05D003752 1.8e-07 60.5 99 40.4
MELO3C024582.2 Cucumis melo HOM05D000040 ORTHO05D003752 2.3e-07 60.1 92 38.0
Hma1.2p1_0064F.1_g034746 Hydrangea macrophylla HOM05D000040 ORTHO05D003752 2.3e-07 60.1 104 37.5
Atru.chr5.175 Acer truncatum HOM05D000040 ORTHO05D003752 3.1e-07 59.7 103 40.8
Gohir.A09G135400 Gossypium hirsutum HOM05D000040 ORTHO05D003752 3.1e-07 59.7 95 42.1
Lj1C262T3 Lonicera japonica HOM05D000040 ORTHO05D003752 3.1e-07 59.7 116 37.1
Rhsim03G0066500 Rhododendron simsii HOM05D000040 ORTHO05D003752 3.1e-07 59.7 88 42.0
Manes.09G047300 Manihot esculenta HOM05D000040 ORTHO05D003752 4.0e-07 59.3 58 51.7
Sabra15G0045900 Salix brachista HOM05D000040 ORTHO05D003752 4.0e-07 59.3 111 37.8
Sabra15G0051900 Salix brachista HOM05D000040 ORTHO05D003752 4.0e-07 59.3 111 37.8
Sabra15G0053300 Salix brachista HOM05D000040 ORTHO05D003752 4.0e-07 59.3 111 37.8
Sabra15G0053800 Salix brachista HOM05D000040 ORTHO05D003752 4.0e-07 59.3 111 37.8
Sabra16G0074200 Salix brachista HOM05D000040 ORTHO05D003752 4.0e-07 59.3 63 50.8
SalBow1G2226 Salvia bowleyana HOM05D000040 ORTHO05D003752 4.0e-07 59.3 95 40.0
GSVIVG01033935001 Vitis vinifera HOM05D000040 ORTHO05D003752 4.0e-07 59.3 109 38.5
ClCG01G014950 Citrullus lanatus HOM05D000040 ORTHO05D003752 5.2e-07 58.9 92 40.2
Duzib168G0465 Durio zibethinus HOM05D000040 ORTHO05D003752 5.2e-07 58.9 79 43.0
Migut.J00715 Erythranthe guttata HOM05D000040 ORTHO05D003752 5.2e-07 58.9 53 52.8
FvH4_6g20050 Fragaria vesca HOM05D000040 ORTHO05D003752 5.2e-07 58.9 95 41.1
FAN14G1101 Fragaria x ananassa HOM05D000040 ORTHO05D003752 5.2e-07 58.9 95 41.1
Lj1g0007775 Lotus japonicus HOM05D000040 ORTHO05D003752 5.2e-07 58.9 65 52.3
Potri.006G204700 Populus trichocarpa HOM05D000040 ORTHO05D003752 5.2e-07 58.9 87 43.7
Ah.08g210150 Amaranthus hybridus HOM05D000040 ORTHO05D003752 6.8e-07 58.5 106 37.7
CARHR162270 Cardamine hirsuta HOM05D000040 ORTHO05D003752 6.8e-07 58.5 84 41.7
Dinv12330 Davidia involucrata HOM05D000040 ORTHO05D003752 6.8e-07 58.5 91 42.9
Gorai.006G150600 Gossypium raimondii HOM05D000040 ORTHO05D003752 6.8e-07 58.5 87 40.2
Potri.009G162400 Populus trichocarpa HOM05D000040 ORTHO05D003752 6.8e-07 58.5 123 31.7
Potri.016G071900 Populus trichocarpa HOM05D000040 ORTHO05D003752 6.8e-07 58.5 95 41.1
Gohir.D01G192100 Gossypium hirsutum HOM05D000040 ORTHO05D003752 8.9e-07 58.2 81 42.0
Prupe.6G140800 Prunus persica HOM05D000040 ORTHO05D003752 8.9e-07 58.2 68 47.1
Sopen11g027570 Solanum pennellii HOM05D000040 ORTHO05D003752 8.9e-07 58.2 56 53.6
PGSC0003DMG400019622 Solanum tuberosum HOM05D000040 ORTHO05D003752 8.9e-07 58.2 56 53.6
Cfa016674 Carpinus fangiana HOM05D000040 ORTHO05D003752 1.2e-06 57.8 50 60.0
Duzib128G0561 Durio zibethinus HOM05D000040 ORTHO05D003752 1.2e-06 57.8 94 42.6
THA.LOC104804399 Tarenaya hassleriana HOM05D000040 ORTHO05D003752 1.2e-06 57.8 87 41.4
CANSAT64G1304 Cannabis sativa HOM05D000040 ORTHO05D003752 1.5e-06 57.4 96 39.6
Cpa.g.sc104.55 Carica papaya HOM05D000040 ORTHO05D003752 1.5e-06 57.4 83 42.2
Duzib170G0248 Durio zibethinus HOM05D000040 ORTHO05D003752 1.5e-06 57.4 109 38.5
Sabra15G0048300 Salix brachista HOM05D000040 ORTHO05D003752 1.5e-06 57.4 129 34.1
Thecc.09G275500 Theobroma cacao HOM05D000040 ORTHO05D003752 1.5e-06 57.4 130 32.3
ECA238G1753 Erigeron canadensis HOM05D000040 ORTHO05D003752 2.0e-06 57.0 54 57.4
Nn6g34741 Nelumbo nucifera HOM05D000040 ORTHO05D003752 2.0e-06 57.0 47 55.3
Phvul.007G269300 Phaseolus vulgaris HOM05D000040 ORTHO05D003752 2.0e-06 57.0 86 45.3
Prupe.8G051600 Prunus persica HOM05D000040 ORTHO05D003752 2.0e-06 57.0 93 39.8
VMungo0720G1185 Vigna mungo HOM05D000040 ORTHO05D003752 2.0e-06 57.0 87 44.8
Ah.15g090480 Amaranthus hybridus HOM05D000040 ORTHO05D003752 2.6e-06 56.6 109 33.9
MBI17_g17146_MAGBIO Magnolia biondii HOM05D000040 ORTHO05D003752 2.6e-06 56.6 43 60.5
TAR270G0002 Trochodendron aralioides HOM05D000040 ORTHO05D003752 2.6e-06 56.6 118 37.3
BcaC06g33396 Brassica carinata HOM05D000040 ORTHO05D003752 3.4e-06 56.2 75 41.3
A03p48920 Brassica napus HOM05D000040 ORTHO05D003752 3.4e-06 56.2 75 42.7
C07p47010 Brassica napus HOM05D000040 ORTHO05D003752 3.4e-06 56.2 75 41.3
MSTRG.19316 Avicennia marina HOM05D000040 ORTHO05D003752 4.4e-06 55.8 101 37.6
BcaB02g08565 Brassica carinata HOM05D000040 ORTHO05D003752 4.4e-06 55.8 87 41.4
CiPaw.09G019600 Carya illinoinensis HOM05D000040 ORTHO05D003752 4.4e-06 55.8 50 56.0
COL.COLO4_22658 Corchorus olitorius HOM05D000040 ORTHO05D003752 4.4e-06 55.8 135 31.9
Haze_19690 Corylus avellana HOM05D000040 ORTHO05D003752 4.4e-06 55.8 50 56.0
Glyma.03G200900 Glycine max HOM05D000040 ORTHO05D003752 4.4e-06 55.8 99 40.4
Ah.08g210140 Amaranthus hybridus HOM05D000040 ORTHO05D003752 5.8e-06 55.5 132 31.8
AT3G52500 Arabidopsis thaliana HOM05D000040 ORTHO05D003752 5.8e-06 55.5 87 42.5
BolC7t45218H Brassica oleracea HOM05D000040 ORTHO05D003752 5.8e-06 55.5 75 41.3
Ciclev10028374m.g Citrus clementina HOM05D000040 ORTHO05D003752 5.8e-06 55.5 90 41.1
Dinv08133 Davidia involucrata HOM05D000040 ORTHO05D003752 5.8e-06 55.5 47 55.3
Dinv10944 Davidia involucrata HOM05D000040 ORTHO05D003752 5.8e-06 55.5 47 55.3
AL5G33210 Arabidopsis lyrata HOM05D000040 ORTHO05D003752 7.5e-06 55.1 87 42.5
BcaC06g32921 Brassica carinata HOM05D000040 ORTHO05D003752 7.5e-06 55.1 83 39.8
BraA03t13993Z Brassica rapa HOM05D000040 ORTHO05D003752 7.5e-06 55.1 75 41.3
Carub.0005s1889 Capsella rubella HOM05D000040 ORTHO05D003752 7.5e-06 55.1 87 42.5
HanXRQChr14g0437901 Helianthus annuus HOM05D000040 ORTHO05D003752 7.5e-06 55.1 63 46.0
A04p06880 Brassica napus HOM05D000040 ORTHO05D003752 9.9e-06 54.7 86 40.7
Gohir.A01G202200 Gossypium hirsutum HOM05D000040 ORTHO05D003752 9.9e-06 54.7 148 31.8


User provided reference genes

Program Settings