Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 1.3e-251 872.5 423 100.0
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 2.8e-217 758.4 426 88.3
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 1.7e-206 722.6 424 83.3
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 1.1e-197 693.3 434 79.7
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 1.1e-176 623.6 425 73.9
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 5.4e-176 621.3 422 72.7
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 7.1e-168 594.3 424 70.5
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.1e-157 560.5 428 66.6
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 8.2e-148 527.7 379 71.8
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 7.1e-144 514.6 428 62.6
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 2.0e-138 496.5 429 59.7
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 3.6e-135 485.7 423 59.1
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 3.6e-135 485.7 426 60.3
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 1.8e-134 483.4 419 58.7
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 3.9e-134 482.3 426 57.3
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 1.5e-133 480.3 358 72.1
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 2.5e-133 479.6 419 58.2
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 4.3e-133 478.8 428 60.3
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 1.3e-132 477.2 415 60.5
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 1.3e-132 477.2 426 58.5
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 4.8e-132 475.3 419 58.2
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 6.3e-132 474.9 414 57.0
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 2.4e-131 473.0 447 55.9
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 3.1e-131 472.6 426 56.1
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 3.1e-131 472.6 419 58.5
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 6.9e-131 471.5 424 57.8
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 9.1e-131 471.1 418 58.4
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 3.4e-130 469.2 429 57.6
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 5.9e-130 468.4 421 58.0
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 7.7e-130 468.0 423 58.4
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 1.7e-129 466.8 426 57.3
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 2.5e-128 463.0 422 55.5
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 1.2e-127 460.7 428 55.6
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 1.2e-127 460.7 417 56.1
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 1.2e-127 460.7 417 55.4
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 1.5e-125 453.8 427 55.7
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 3.3e-125 452.6 422 54.0
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 5.7e-125 451.8 427 57.4
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 9.7e-125 451.1 432 55.3
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 1.7e-124 450.3 424 54.5
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 4.8e-124 448.7 427 55.5
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 7.0e-123 444.9 415 57.3
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 9.1e-123 444.5 435 56.6
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 1.5e-122 443.7 430 55.1
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 2.6e-122 443.0 420 55.5
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 2.2e-121 439.9 428 54.7
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 8.5e-121 438.0 435 52.9
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 1.9e-120 436.8 422 55.2
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 4.2e-120 435.6 543 46.0
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 5.5e-120 435.3 423 54.4
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 5.5e-120 435.3 424 52.8
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 7.2e-120 434.9 421 53.9
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 2.1e-119 433.3 421 53.4
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 2.1e-119 433.3 466 51.3
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.1e-119 433.3 445 52.8
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.1e-119 433.3 445 52.8
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 2.7e-119 433.0 423 53.7
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 8.0e-119 431.4 411 56.2
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 1.0e-118 431.0 421 53.7
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 1.0e-118 431.0 421 54.6
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 2.3e-118 429.9 421 53.2
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 5.2e-118 428.7 430 53.0
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 2.0e-117 426.8 424 54.2
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 4.4e-117 425.6 418 54.3
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 1.3e-116 424.1 428 53.5
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 1.7e-116 423.7 478 49.6
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 2.8e-116 422.9 422 52.8
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 7.0e-115 418.3 420 54.3
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 7.0e-115 418.3 438 49.3
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 7.0e-115 418.3 422 52.1
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 7.7e-114 414.8 411 52.8
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 1.7e-113 413.7 427 51.5
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 6.5e-113 411.8 327 62.7
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 6.5e-113 411.8 417 53.0
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 2.7e-111 406.4 420 50.7
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 5.7e-109 398.7 371 55.5
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 7.5e-109 398.3 376 56.4
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 6.3e-108 395.2 379 55.4
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 4.1e-107 392.5 440 50.5
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 1.1e-104 384.4 423 49.9
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 9.4e-104 381.3 359 56.0
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 1.8e-99 367.1 402 46.8
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.2e-98 364.4 445 48.5
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 1.3e-97 360.9 425 46.1
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 3.3e-96 356.3 442 47.5
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 9.5e-96 354.8 447 47.7
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 5.0e-89 332.4 375 49.9
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 2.5e-88 330.1 350 52.6
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 3.3e-88 329.7 337 51.6
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 8.0e-87 325.1 424 42.5
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 2.5e-80 303.5 431 42.5
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 4.3e-80 302.8 402 44.0
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 5.8e-77 292.4 411 40.9
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 5.1e-73 279.3 349 49.9
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 6.8e-70 268.9 293 46.1
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 8.9e-70 268.5 345 44.6
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 5.6e-64 249.2 356 43.5
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 6.0e-58 229.2 161 65.8
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 1.4e-54 218.0 304 43.1
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 1.1e-48 198.4 193 47.2
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 2.8e-47 193.7 400 29.8
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.2e-45 188.3 226 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 8.4e-36 155.6 222 38.3
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 4.2e-35 153.3 234 41.0
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 3.3e-32 143.7 83 78.3
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 5.3e-22 109.8 163 47.9
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 2.3e-17 94.4 123 43.9
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 1.2e-13 82.0 67 52.2
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.5e-13 81.6 238 26.9
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 3.2e-11 73.9 157 40.8
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.6e-08 64.3 96 47.9
CDE01G0194 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.8e-06 58.2 49 59.2


User provided reference genes

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