Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1667.9 830 100.0
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 833 84.5
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1355.5 818 83.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 830 82.9
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 823 83.0
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 810 81.9
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 815 81.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 820 81.7
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 817 81.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 818 80.8
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 815 80.9
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 813 80.6
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 825 79.4
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1288.9 816 80.8
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 855 74.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 821 79.7
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 815 79.8
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 761 84.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 817 78.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 833 80.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 821 78.3
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 817 78.9
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 815 78.9
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1260.0 824 77.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 808 78.5
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 824 76.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 816 77.6
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 815 78.4
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 825 77.6
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 818 78.1
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 824 77.9
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 818 78.1
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 818 78.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 801 79.3
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 827 77.5
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 825 77.3
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 813 77.2
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 823 76.9
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 825 76.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 825 76.8
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1245.3 827 77.3
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 827 77.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 825 76.7
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 820 77.0
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 825 77.1
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1237.2 825 75.9
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 825 76.0
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 825 76.0
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 769 80.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 813 76.6
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 820 76.7
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 804 76.7
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 834 75.1
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 813 76.9
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 830 75.7
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 809 76.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 824 76.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 819 75.6
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1224.5 821 76.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 851 73.9
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 834 74.8
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1221.5 823 75.3
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 818 76.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 836 73.9
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 812 76.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1218.8 808 76.1
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1218.0 814 76.2
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 826 75.8
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 874 72.4
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1214.5 806 76.6
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1212.6 828 74.9
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 850 73.3
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 836 73.7
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 820 76.6
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1211.8 813 75.8
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1209.9 813 75.4
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1204.9 815 74.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1203.3 788 77.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1202.2 835 73.8
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1201.4 807 75.5
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1201.0 823 74.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1199.9 821 75.3
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1192.9 836 73.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1190.6 807 76.2
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 823 74.5
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 823 74.5
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 823 74.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1189.1 824 73.7
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 826 74.0
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1184.1 818 75.1
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 807 74.3
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1179.1 823 73.3
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1178.7 811 74.0
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 814 73.7
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 823 73.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 823 73.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 823 73.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 823 73.8
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1176.4 818 74.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1174.1 826 74.0
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 829 74.1
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1171.8 829 73.9
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1171.8 826 72.5
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1171.4 814 73.3
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1170.6 803 74.3
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1168.7 818 73.0
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1166.4 689 84.9
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1162.5 814 72.7
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 815 73.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 815 73.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 807 74.1
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1159.4 825 71.4
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1158.3 811 73.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1157.9 810 72.8
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1157.9 855 70.9
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1156.4 815 72.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1154.0 824 71.8
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1152.5 764 77.1
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1151.7 814 72.5
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 817 73.3
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 816 73.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1145.6 807 75.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1143.3 870 70.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1141.7 815 71.4
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1134.8 831 71.6
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1133.6 856 68.3
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1128.2 825 71.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1124.4 827 66.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 820 71.1
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1120.9 817 72.0
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1119.0 778 72.8
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1108.6 758 74.3
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 852 68.4
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1100.1 822 70.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1085.5 808 68.9
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1084.3 885 65.6
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 7.3e-310 1067.0 808 67.5
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 2.9e-306 1055.0 822 66.5
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.4e-300 1035.4 808 65.6
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 5.8e-299 1030.8 724 74.3
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.4e-297 1024.2 812 65.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 6.9e-276 954.1 820 64.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.0e-262 909.4 587 75.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.0e-247 860.5 633 65.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-240 836.3 819 57.9
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.3e-237 827.0 581 70.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 1.1e-236 823.9 532 79.1
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 3.8e-234 815.5 529 76.4
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-164 584.3 708 49.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.0e-134 484.2 460 54.6
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.5e-125 452.2 311 71.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.0e-122 443.7 346 71.1
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 8.3e-104 382.5 313 69.6
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.6e-91 341.7 264 65.5
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.6e-86 323.6 398 49.2
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.9e-81 305.8 580 42.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 3.0e-53 214.5 128 80.5
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.3e-48 199.1 157 66.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.8e-42 178.7 163 55.8
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 5.7e-36 157.1 524 29.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.0e-32 144.1 461 28.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.8e-27 127.5 452 25.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 3.5e-25 121.3 408 29.4
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.9e-24 118.2 472 27.3
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 6.5e-24 117.1 76 72.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.0e-22 110.2 103 54.4
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 5.2e-21 107.5 63 81.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.7e-20 104.0 97 57.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 2.2e-16 92.0 57 78.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-16 90.9 217 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-15 89.4 220 31.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 5.2e-13 80.9 83 51.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 8.5e-08 63.5 154 31.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-06 58.9 102 37.3


User provided reference genes

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