Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g021885 Medicago truncatula HOM05D001194 ORTHO05D005909 9.8e-115 416.8 204 100.0
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 6.2e-69 264.6 230 65.2
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 9.0e-68 260.8 230 62.6
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 2.9e-66 255.8 230 62.2
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 2.7e-64 249.2 231 58.0
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 3.5e-64 248.8 230 60.9
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 2.3e-63 246.1 231 58.0
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 2.8e-61 239.2 228 58.3
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 2.8e-61 239.2 228 58.3
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 4.0e-60 235.3 230 57.8
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 3.4e-59 232.3 230 56.5
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 4.9e-58 228.4 228 55.7
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 1.9e-57 226.5 233 55.8
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 2.4e-57 226.1 230 53.9
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 4.2e-57 225.3 226 53.5
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 7.1e-57 224.6 230 55.2
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 7.1e-57 224.6 232 56.0
Sc12g0009870 Simmondsia chinensis HOM05D001194 ORTHO05D005909 7.1e-57 224.6 232 54.3
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 1.2e-56 223.8 230 56.1
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.6e-56 223.4 231 55.0
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 2.1e-56 223.0 232 56.0
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 3.5e-56 222.2 221 56.1
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 3.5e-56 222.2 230 54.8
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 3.5e-56 222.2 229 55.0
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 4.6e-56 221.9 229 55.0
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 4.6e-56 221.9 230 54.8
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 7.9e-56 221.1 230 53.0
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 7.9e-56 221.1 230 53.0
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 1.3e-55 220.3 229 55.5
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 2.3e-55 219.5 230 53.5
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 2.3e-55 219.5 229 55.0
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 6.7e-55 218.0 229 53.7
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 1.1e-54 217.2 221 53.8
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 1.1e-54 217.2 229 53.7
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 1.1e-54 217.2 229 54.1
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 1.9e-54 216.5 230 53.9
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 4.3e-54 215.3 229 51.5
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 7.4e-54 214.5 230 53.0
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 7.4e-54 214.5 230 51.7
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 1.3e-53 213.8 230 52.2
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.6e-53 213.4 230 52.6
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 1.6e-53 213.4 227 53.3
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 1.6e-53 213.4 227 53.3
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 1.6e-53 213.4 227 53.3
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 2.1e-53 213.0 229 52.0
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 2.8e-53 212.6 230 52.6
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 3.7e-53 212.2 230 51.3
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 4.8e-53 211.8 229 53.7
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 4.8e-53 211.8 229 53.7
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 4.8e-53 211.8 230 51.7
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 6.2e-53 211.5 230 51.7
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 6.2e-53 211.5 230 51.7
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 8.1e-53 211.1 230 51.7
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 1.4e-52 210.3 231 51.9
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.8e-52 209.9 230 51.3
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 3.1e-52 209.1 232 51.7
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 4.0e-52 208.8 231 51.5
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 5.3e-52 208.4 230 50.4
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 6.9e-52 208.0 230 51.3
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 1.2e-51 207.2 231 51.1
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 1.5e-51 206.8 230 51.3
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 1.5e-51 206.8 231 50.2
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 2.0e-51 206.5 230 49.6
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 3.4e-51 205.7 229 51.1
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 3.4e-51 205.7 229 52.4
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 5.8e-51 204.9 229 52.0
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 5.8e-51 204.9 227 52.9
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 7.6e-51 204.5 230 50.9
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 7.6e-51 204.5 231 51.1
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 1.7e-50 203.4 230 50.4
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 2.2e-50 203.0 230 50.4
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 2.2e-50 203.0 228 51.3
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 3.8e-50 202.2 230 50.9
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 3.8e-50 202.2 230 50.9
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 4.9e-50 201.8 230 51.3
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 6.5e-50 201.4 230 49.6
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 6.5e-50 201.4 229 51.5
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 6.5e-50 201.4 221 51.6
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 1.9e-49 199.9 227 50.7
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 1.9e-49 199.9 230 49.6
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 4.2e-49 198.7 223 51.6
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 4.2e-49 198.7 227 50.7
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 4.2e-49 198.7 227 50.7
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 4.2e-49 198.7 228 51.3
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 4.2e-49 198.7 230 49.1
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 4.2e-49 198.7 221 50.7
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 5.5e-49 198.4 214 52.8
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 5.5e-49 198.4 230 49.6
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 7.1e-49 198.0 227 49.8
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 9.3e-49 197.6 230 49.1
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 2.7e-48 196.1 233 49.8
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 1.3e-47 193.7 228 50.9
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 2.3e-47 193.0 221 50.2
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 3.0e-47 192.6 225 49.3
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 3.0e-47 192.6 225 49.3
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 3.9e-47 192.2 227 49.3
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 3.9e-47 192.2 226 49.1
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 5.1e-47 191.8 211 52.1
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 8.7e-47 191.0 215 51.2
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 1.1e-46 190.7 225 48.9
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 1.1e-46 190.7 230 48.7
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 7.4e-46 188.0 232 46.1
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 3.7e-45 185.7 231 48.1
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 8.2e-45 184.5 224 47.8
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 7.6e-43 177.9 221 48.0
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 8.5e-42 174.5 221 47.5
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 1.1e-41 174.1 250 46.0
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 1.1e-41 174.1 221 47.5
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 3.2e-41 172.6 236 45.8
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 7.2e-41 171.4 188 53.2
CDE05G3462 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 3.0e-39 166.0 223 44.8
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 3.3e-38 162.5 226 42.9
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 1.6e-37 160.2 259 40.2
Oeu039980.1 Olea europaea HOM05D001194 ORTHO05D005909 4.5e-35 152.1 186 46.8
Hma1.2p1_0132F.1_g060700 Hydrangea macrophylla HOM05D001194 ORTHO05D005909 5.9e-35 151.8 158 53.8
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 9.4e-33 144.4 237 41.8
SEGI_11676 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 9.4e-33 144.4 263 36.5
Actinidia32132 Actinidia chinensis HOM05D001194 ORTHO05D005909 1.6e-32 143.7 230 40.0
Zm00001eb162300 Zea mays HOM05D001194 ORTHO05D005909 4.6e-32 142.1 240 40.8
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 1.8e-31 140.2 225 42.2
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 5.1e-31 138.7 218 45.4
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 2.6e-30 136.3 113 60.2
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 7.4e-30 134.8 114 58.8
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 7.4e-30 134.8 114 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 1.6e-24 117.1 220 39.1
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 4.7e-24 115.5 197 40.6
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 1.0e-23 114.4 127 51.2
Pp3c1_36440 Physcomitrium patens HOM05D001194 ORTHO05D005909 2.0e-22 110.2 122 46.7
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 2.8e-21 106.3 101 51.5
TAR383G0515 Trochodendron aralioides HOM05D001194 ORTHO05D005909 2.0e-19 100.1 75 61.3
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 3.2e-17 92.8 79 59.5
GSVIVG01016891001 Vitis vinifera HOM05D001194 ORTHO05D005909 1.8e-12 77.0 57 66.7
Ca_23297_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 8.5e-10 68.2 75 58.7
Oeu039981.1 Olea europaea HOM05D001194 ORTHO05D005909 1.6e-08 63.9 41 75.6
Cpa.g.sc131.31 Carica papaya HOM05D001194 ORTHO05D005909 4.0e-07 59.3 41 68.3
BcaC01g01291 Brassica carinata HOM05D001194 ORTHO05D005909 2.6e-06 56.6 65 49.2


User provided reference genes

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