Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 4.1e-131 471.9 323 100.0
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 8.1e-47 191.8 166 68.7
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.2e-44 183.7 165 66.1
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.6e-42 177.6 164 68.3
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 6.0e-42 175.6 165 67.3
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 4.3e-40 169.5 166 62.0
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 6.9e-38 162.2 166 60.8
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 3.4e-37 159.8 167 59.9
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 6.4e-36 155.6 162 58.6
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.8e-33 147.5 162 58.0
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 4.3e-32 142.9 150 60.0
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 4.3e-32 142.9 150 60.0
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 5.3e-30 136.0 138 61.6
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 2.7e-26 123.6 130 60.8
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 6.7e-17 92.4 149 46.3
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.4e-14 84.7 151 45.0
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.8e-14 84.3 155 42.6
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.1e-14 83.2 62 69.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 6.9e-14 82.4 69 63.8
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.2e-13 81.6 59 69.5
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 1.2e-13 81.6 148 41.9
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.5e-13 81.3 67 65.7
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.5e-13 81.3 62 67.7
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 2.0e-13 80.9 161 39.1
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 2.6e-13 80.5 161 40.4
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 3.4e-13 80.1 67 64.2
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 4.5e-13 79.7 152 41.4
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 5.9e-13 79.3 402 27.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 5.9e-13 79.3 74 59.5
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 5.9e-13 79.3 72 61.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 7.7e-13 79.0 62 64.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 7.7e-13 79.0 148 41.2
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 7.7e-13 79.0 67 62.7
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.0e-12 78.6 62 62.9
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.3e-12 78.2 62 64.5
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.3e-12 78.2 59 66.1
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.3e-12 78.2 62 64.5
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.3e-12 78.2 66 63.6
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.3e-12 78.2 62 66.1
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 2.9e-12 77.0 68 61.8
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 3.8e-12 76.6 62 64.5
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 3.8e-12 76.6 62 66.1
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 5.0e-12 76.3 71 59.2
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.1e-11 75.1 62 64.5
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.4e-11 74.7 62 59.7
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 1.4e-11 74.7 59 66.1
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.4e-11 74.7 59 66.1
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.4e-11 74.7 59 66.1
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.4e-11 74.7 59 66.1
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.4e-11 74.7 64 60.9
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 1.4e-11 74.7 59 66.1
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.9e-11 74.3 71 60.6
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.9e-11 74.3 59 61.0
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.5e-11 73.9 71 59.2
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 2.5e-11 73.9 62 59.7
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 3.2e-11 73.6 150 42.0
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.2e-11 73.6 59 66.1
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 3.2e-11 73.6 62 64.5
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 3.2e-11 73.6 62 58.1
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 3.2e-11 73.6 149 40.3
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.2e-11 73.6 59 64.4
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.2e-11 73.2 58 63.8
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 4.2e-11 73.2 67 59.7
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 5.5e-11 72.8 58 62.1
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 5.5e-11 72.8 58 63.8
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.5e-11 72.8 59 59.3
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 7.2e-11 72.4 70 55.7
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 7.2e-11 72.4 58 62.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 7.2e-11 72.4 62 58.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 9.4e-11 72.0 62 61.3
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 9.4e-11 72.0 67 59.7
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 9.4e-11 72.0 62 59.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-10 71.6 58 62.1
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.2e-10 71.6 62 62.9
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.2e-10 71.6 67 55.2
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.6e-10 71.2 67 58.2
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.6e-10 71.2 67 58.2
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 1.6e-10 71.2 58 65.5
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.6e-10 71.2 67 58.2
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.6e-10 71.2 67 58.2
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 2.1e-10 70.9 151 38.4
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 2.7e-10 70.5 62 56.5
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 2.7e-10 70.5 52 65.4
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 3.6e-10 70.1 74 54.1
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.6e-10 70.1 70 55.7
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.6e-10 70.1 62 61.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 4.6e-10 69.7 64 56.2
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.6e-10 69.7 67 55.2
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 7.9e-10 68.9 58 60.3
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 7.9e-10 68.9 53 64.2
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.0e-09 68.6 162 37.0
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.0e-09 68.6 62 61.3
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 1.4e-09 68.2 67 56.7
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.8e-09 67.8 58 60.3
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.8e-09 67.8 74 52.7
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 3.0e-09 67.0 74 52.7
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 3.0e-09 67.0 62 54.8
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 3.0e-09 67.0 62 54.8
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 3.0e-09 67.0 62 54.8
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 3.0e-09 67.0 62 54.8
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 3.0e-09 67.0 62 54.8
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 3.0e-09 67.0 61 57.4
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 3.0e-09 67.0 62 56.5
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 1.1e-08 65.1 74 51.4
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.5e-08 64.7 74 58.1
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 3.3e-08 63.5 52 57.7
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 3.3e-08 63.5 62 51.6
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 3.3e-08 63.5 82 48.8
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 5.7e-08 62.8 74 48.6
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 7.4e-08 62.4 79 48.1
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 7.4e-08 62.4 79 48.1
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.3e-07 61.6 118 40.7
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.3e-07 61.6 67 52.2
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 1.3e-07 61.6 62 54.8
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 1.8e-06 57.8 154 35.1
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.8e-06 57.8 170 35.3
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 9.1e-06 55.5 64 48.4


User provided reference genes

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