Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.8e-129 465.3 239 100.0
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 7.9e-108 394.0 244 88.5
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.6e-106 389.0 239 86.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.1e-104 383.6 236 85.6
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.0e-86 321.6 246 71.1
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.2e-84 317.0 237 72.6
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.5e-82 310.1 235 70.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 7.5e-82 307.8 238 68.5
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.7e-81 306.6 237 70.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.7e-81 305.4 237 69.6
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.8e-80 303.1 229 67.2
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.0e-78 297.4 250 65.6
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.0e-78 297.4 250 65.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.1e-77 293.9 246 64.2
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.3e-77 292.4 241 65.6
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.2e-74 283.9 240 65.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.5e-74 283.5 241 64.7
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.7e-73 280.0 241 63.9
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.7e-73 280.0 241 63.9
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.7e-73 280.0 198 69.7
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 6.4e-73 278.1 242 61.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.4e-72 275.0 186 71.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.0e-72 274.6 202 66.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.0e-72 274.6 246 60.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-71 273.9 241 62.2
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.2e-71 273.9 232 61.6
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.2e-71 273.9 238 61.8
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.0e-71 273.1 241 61.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.6e-71 271.9 238 61.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.6e-71 271.9 227 63.9
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.6e-71 271.9 231 61.9
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 7.8e-71 271.2 246 61.0
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.8e-71 271.2 186 70.4
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.3e-70 270.4 237 61.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.3e-70 270.4 239 60.7
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.7e-70 270.0 234 57.7
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.3e-70 269.6 241 61.0
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.0e-70 269.2 237 59.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.0e-70 269.2 237 59.9
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.0e-70 269.2 237 59.9
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 5.0e-70 268.5 176 74.4
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-70 268.5 238 61.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 6.6e-70 268.1 236 60.2
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.6e-70 268.1 235 60.9
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.6e-70 268.1 241 60.6
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 8.6e-70 267.7 237 59.5
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.1e-69 267.3 239 59.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-69 267.3 186 68.3
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.1e-69 267.3 240 58.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.5e-69 266.2 224 61.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.2e-68 263.8 246 58.9
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.6e-68 263.5 240 58.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.6e-68 263.5 252 56.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.6e-68 263.5 235 60.0
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-68 263.1 176 71.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.8e-68 262.7 163 80.4
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.6e-68 262.3 240 60.4
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.4e-67 260.4 241 59.3
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.4e-67 260.4 242 59.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.4e-67 260.4 245 59.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.4e-67 260.4 186 67.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.1e-67 259.2 244 59.0
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.0e-67 258.8 249 57.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.0e-67 258.8 176 69.9
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 4.0e-67 258.8 241 59.8
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 5.2e-67 258.5 245 59.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 6.8e-67 258.1 227 60.4
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.9e-67 257.7 244 58.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 8.9e-67 257.7 248 55.2
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.2e-66 257.3 194 63.9
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.2e-66 257.3 234 60.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.4e-66 255.4 234 59.8
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.5e-66 254.6 185 64.3
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 7.5e-66 254.6 237 58.2
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.5e-66 254.6 235 60.0
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 9.8e-66 254.2 177 67.8
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.3e-65 253.8 246 57.3
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-65 253.8 239 57.3
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-65 253.8 239 57.3
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.3e-65 253.8 235 59.6
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.7e-65 253.4 243 57.6
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 2.2e-65 253.1 239 58.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 2.2e-65 253.1 239 58.6
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-65 252.7 238 59.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.9e-65 252.7 245 56.7
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.9e-65 251.9 234 59.4
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 6.4e-65 251.5 246 56.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.4e-65 251.5 209 59.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.1e-64 250.8 181 68.0
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.4e-64 250.4 242 58.7
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.4e-64 250.4 180 67.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.4e-64 249.6 233 57.1
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.4e-64 249.6 180 67.2
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.2e-64 249.2 241 57.3
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 4.1e-64 248.8 239 56.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 5.4e-64 248.4 174 68.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 9.2e-64 247.7 239 56.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.6e-63 246.9 225 56.9
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-63 246.9 180 66.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.6e-63 246.9 198 62.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.7e-63 246.1 243 55.6
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.7e-63 246.1 229 56.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.6e-63 245.4 177 66.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.0e-63 245.0 244 59.0
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.0e-63 245.0 242 57.4
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 6.0e-63 245.0 228 57.0
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.7e-62 243.4 189 65.1
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.9e-62 242.3 165 67.9
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.1e-61 240.7 181 65.2
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.9e-61 240.0 232 56.0
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 3.3e-61 239.2 185 62.7
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.6e-61 238.4 187 60.4
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 9.5e-61 237.7 187 59.9
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.6e-60 236.9 175 62.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.8e-60 236.1 150 76.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.2e-60 235.0 226 54.4
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.1e-59 234.2 237 54.9
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 4.0e-59 232.3 190 60.0
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 4.0e-59 232.3 225 55.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 8.9e-59 231.1 238 53.4
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-58 230.3 161 67.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.5e-58 230.3 234 53.4
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.6e-58 229.6 245 53.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 5.8e-58 228.4 172 61.0
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.3e-57 227.3 187 63.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.7e-57 226.9 226 53.1
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.3e-57 224.6 147 72.8
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.9e-56 223.4 224 51.3
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.1e-56 222.2 216 54.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 7.1e-56 221.5 226 54.9
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.9e-54 215.7 185 54.6
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.6e-54 214.5 219 55.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.9e-53 213.4 171 59.1
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.7e-52 208.8 241 46.9
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.4e-51 206.5 204 51.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-51 205.3 164 63.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.5e-50 203.8 171 57.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 4.4e-50 202.2 194 52.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.9e-49 199.5 183 58.5
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 6.4e-49 198.4 163 62.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-45 186.4 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.9e-41 172.2 147 60.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.4e-40 169.9 112 70.5
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.3e-37 159.5 216 40.7
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.1e-36 154.8 106 67.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.7e-33 147.1 227 38.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.1e-31 140.2 161 44.1
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 5.6e-29 132.1 169 40.8
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 7.4e-29 131.7 208 36.5
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 6.2e-28 128.6 150 46.7
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.6e-26 121.7 76 73.7
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.4e-19 100.9 151 39.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 4.9e-17 92.4 86 54.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.1e-11 74.7 86 40.7
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.5e-08 63.5 95 42.1


User provided reference genes

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