Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 5.0e-82 307.8 161 100.0
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.4e-68 262.3 164 86.0
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.5e-62 243.0 175 75.4
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 7.6e-62 240.7 154 80.5
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 7.6e-62 240.7 154 80.5
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.3e-61 240.0 172 75.6
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 1.3e-61 240.0 162 76.5
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.9e-60 236.1 167 74.9
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.4e-60 235.7 175 73.1
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 3.2e-60 235.3 167 77.8
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.3e-58 229.2 163 77.3
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.3e-58 229.2 173 71.1
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 3.0e-58 228.8 163 73.0
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.8e-56 222.2 170 68.8
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.8e-56 222.2 170 68.8
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 3.6e-56 221.9 154 71.4
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 4.8e-56 221.5 171 67.3
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.4e-55 219.9 173 66.5
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.8e-55 219.5 163 73.0
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.0e-55 218.4 172 67.4
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.9e-55 217.6 172 67.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.9e-55 217.6 172 66.9
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.5e-54 214.9 168 70.8
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.7e-53 213.0 171 67.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.2e-53 212.6 172 65.1
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.9e-53 212.2 169 67.5
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 4.9e-53 211.5 165 64.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 8.4e-53 210.7 167 65.3
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 4.2e-52 208.4 163 66.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.6e-51 206.5 174 60.9
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.7e-51 205.7 168 65.5
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-50 203.4 173 63.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 3.9e-50 201.8 162 67.9
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.9e-50 201.8 169 63.9
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 6.7e-50 201.1 169 65.1
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.9e-49 199.5 148 70.3
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.5e-49 199.1 171 62.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.5e-49 199.1 153 70.6
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.5e-49 199.1 167 62.3
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 4.3e-49 198.4 232 51.3
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 3.7e-48 195.3 150 64.0
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 8.1e-48 194.1 167 59.3
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.1e-47 193.7 164 65.9
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.4e-47 193.4 163 66.9
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.4e-47 193.4 171 60.8
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.8e-47 193.0 146 68.5
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 2.4e-47 192.6 165 61.2
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.1e-47 192.2 172 57.0
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.3e-47 191.4 165 64.2
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 5.3e-47 191.4 156 66.0
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.5e-46 189.9 163 65.0
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 3.4e-46 188.7 168 61.9
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.8e-46 188.0 174 56.9
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 7.6e-46 187.6 156 64.1
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 7.6e-46 187.6 150 60.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 7.6e-46 187.6 164 58.5
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.3e-45 186.8 150 66.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.3e-45 186.8 177 53.1
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 3.8e-45 185.3 269 44.6
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 3.8e-45 185.3 139 66.2
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 8.4e-45 184.1 174 54.6
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-44 183.3 163 61.3
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 4.2e-44 181.8 198 53.0
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 4.2e-44 181.8 156 64.7
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.2e-43 180.3 170 58.2
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.6e-43 179.9 147 62.6
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.5e-43 178.7 163 57.7
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 4.6e-43 178.3 164 62.8
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 7.9e-43 177.6 158 58.9
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.3e-42 176.8 171 54.4
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.0e-42 175.6 164 56.1
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 3.0e-42 175.6 163 58.9
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 5.1e-42 174.9 164 56.1
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 5.1e-42 174.9 164 56.1
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 5.1e-42 174.9 162 58.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 5.1e-42 174.9 181 55.2
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.7e-42 174.5 157 57.3
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 6.7e-42 174.5 146 61.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 6.7e-42 174.5 170 57.1
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 6.7e-42 174.5 165 57.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 8.7e-42 174.1 173 52.0
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.5e-41 173.3 165 55.8
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.5e-41 173.3 163 54.6
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.9e-41 172.9 178 55.1
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 3.3e-41 172.2 163 55.8
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.3e-41 172.2 119 73.1
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 4.3e-41 171.8 145 59.3
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 4.3e-41 171.8 160 56.9
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 4.3e-41 171.8 145 59.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 4.3e-41 171.8 160 56.9
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 9.6e-41 170.6 166 54.8
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.3e-40 170.2 162 54.9
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-40 169.9 145 58.6
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.1e-40 169.5 160 58.8
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.7e-40 168.7 138 67.4
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 4.8e-40 168.3 161 54.7
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.8e-40 168.3 153 61.4
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 8.2e-40 167.5 145 57.9
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.1e-39 167.2 161 56.5
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 2.4e-39 166.0 153 57.5
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 3.1e-39 165.6 149 59.7
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.0e-39 165.2 169 53.8
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 2.0e-38 162.9 150 57.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-38 162.9 146 58.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.6e-38 162.5 166 54.8
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.2e-37 159.5 171 50.9
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 7.1e-36 154.5 132 58.3
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 9.3e-36 154.1 170 52.4
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 7.9e-35 151.0 226 42.5
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 3.0e-34 149.1 138 52.9
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.5e-33 146.7 138 52.9
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.3e-33 145.6 119 62.2
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 5.7e-33 144.8 119 58.0
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.2e-29 132.9 154 50.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.9e-29 132.5 115 61.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.5e-29 131.3 158 47.5
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.5e-29 131.3 149 49.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.5e-29 131.3 149 49.0
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-28 130.6 117 52.1
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.1e-28 130.6 255 35.7
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.5e-28 129.4 163 50.9
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-28 129.0 117 55.6
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-28 129.0 120 54.2
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.2e-27 127.1 156 46.8
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.1e-25 120.6 143 46.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-22 110.5 128 50.8
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-22 110.5 128 50.8
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 2.6e-22 109.4 177 41.8
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.0e-21 107.5 97 51.5
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.5e-20 101.7 133 41.4
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-17 93.2 103 47.6
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 4.4e-17 92.0 82 62.2
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 7.4e-17 91.3 168 38.7
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.2e-16 87.8 69 66.7
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.9e-13 79.3 112 45.5
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 4.7e-11 72.0 88 47.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.3e-10 69.7 88 46.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.9e-10 68.9 88 47.7
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 3.9e-10 68.9 88 47.7
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.7e-09 65.1 88 44.3
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.7e-08 63.5 59 59.3
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 4.8e-08 62.0 84 44.0
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 4.8e-08 62.0 84 44.0
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 6.3e-08 61.6 57 57.9
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 3.1e-07 59.3 48 60.4


User provided reference genes

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