Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 3.3e-206 721.5 367 100.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.7e-171 605.5 374 84.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 6.4e-133 478.0 375 73.1
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 7.4e-129 464.5 386 68.9
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.1e-127 459.1 383 70.0
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 9.3e-124 447.6 383 67.6
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 3.4e-118 429.1 265 82.6
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.3e-112 410.6 391 61.9
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 5.3e-111 405.2 380 61.6
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 6.9e-111 404.8 380 61.6
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.6e-104 383.6 375 60.3
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 8.2e-104 381.3 387 59.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 8.2e-104 381.3 382 58.4
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 8.2e-104 381.3 384 57.8
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.4e-103 379.8 453 53.2
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 4.1e-103 379.0 377 59.4
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.6e-102 376.3 386 57.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.0e-101 374.4 380 60.0
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.3e-101 374.0 366 59.8
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 8.5e-101 371.3 386 58.3
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 8.5e-101 371.3 384 58.1
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-100 370.5 385 57.4
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 2.5e-100 369.8 378 56.6
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.2e-99 367.5 385 57.9
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-99 367.1 379 57.5
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.6e-99 367.1 396 55.6
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 3.6e-99 365.9 386 55.2
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 2.0e-97 360.1 374 57.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 6.3e-96 355.1 439 54.0
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 6.3e-96 355.1 365 58.1
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.9e-95 351.7 390 55.6
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 6.9e-95 351.7 377 56.5
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 2.6e-94 349.7 391 56.5
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.6e-89 333.2 369 55.6
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 6.3e-88 328.6 428 52.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 6.3e-88 328.6 367 52.9
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 6.3e-88 328.6 384 53.6
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 5.3e-87 325.5 397 50.4
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.5e-86 322.4 376 52.4
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.0e-85 321.2 387 51.9
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.9e-85 319.7 376 51.9
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.1e-84 317.8 382 50.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.9e-84 317.0 384 51.3
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.7e-83 313.2 376 53.2
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.7e-82 308.5 366 51.6
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.0e-81 307.0 359 52.6
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 9.7e-81 304.7 384 52.1
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 9.7e-81 304.7 384 52.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 6.3e-80 302.0 371 47.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.4e-79 300.8 369 48.2
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.8e-79 300.4 381 49.9
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.4e-79 300.1 373 48.0
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 9.1e-79 298.1 370 48.1
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.0e-77 294.7 376 50.3
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 8.5e-77 291.6 392 49.7
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.1e-76 291.2 373 48.0
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.5e-76 290.8 375 49.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.5e-76 290.8 340 50.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 7.2e-76 288.5 358 52.2
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.1e-75 287.0 373 48.0
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 2.7e-75 286.6 374 47.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 8.8e-74 281.6 378 49.5
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 8.8e-74 281.6 368 49.5
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.2e-73 281.2 379 47.0
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.0e-73 280.4 364 48.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.7e-73 278.9 377 49.1
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 5.7e-73 278.9 363 50.1
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.3e-72 277.7 364 49.2
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 2.8e-72 276.6 360 50.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 2.8e-72 276.6 378 47.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.8e-72 275.8 382 49.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 6.3e-72 275.4 382 48.7
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-71 274.2 361 49.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-71 274.2 368 50.5
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.8e-71 273.9 382 48.7
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.1e-71 273.1 364 47.3
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 9.1e-71 271.6 361 49.6
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.2e-70 271.2 386 49.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.0e-70 270.4 389 49.1
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 2.7e-70 270.0 389 48.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.7e-70 270.0 373 49.1
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.0e-69 268.1 387 47.5
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.3e-69 267.7 375 46.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.9e-69 266.5 396 45.5
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 6.5e-69 265.4 400 45.0
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.6e-67 259.6 378 46.0
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.0e-66 256.5 395 45.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.8e-66 255.4 376 45.5
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.2e-65 254.6 360 46.7
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 2.8e-64 250.0 378 46.0
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.1e-63 248.1 343 46.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.4e-63 246.9 393 41.2
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 3.1e-63 246.5 387 45.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.6e-62 244.2 337 48.1
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 7.8e-62 241.9 380 43.7
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.8e-59 233.4 376 42.8
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 9.8e-57 224.9 195 61.5
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 9.8e-57 224.9 354 41.8
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.3e-56 224.6 393 40.7
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.1e-55 221.5 369 39.8
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.8e-55 220.7 357 42.3
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 2.3e-53 213.8 111 96.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.3e-52 209.9 391 40.2
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.1e-50 203.4 292 47.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.0e-50 203.0 197 56.9
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 4.9e-48 196.1 416 37.3
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.1e-47 194.9 189 55.6
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.9e-47 194.1 182 56.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.6e-46 191.0 283 45.9
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 6.0e-46 189.1 265 47.2
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.3e-45 188.0 365 39.5
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.3e-45 188.0 385 37.1
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 3.0e-45 186.8 373 39.9
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 8.6e-45 185.3 205 52.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 2.1e-43 180.6 340 38.8
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.2e-43 179.1 357 38.7
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 3.7e-40 169.9 367 34.1
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.6e-38 164.5 360 36.4
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 2.1e-38 164.1 372 34.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.7e-38 163.7 192 50.0
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.5e-36 157.9 133 60.2
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.9e-36 157.5 347 34.0
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 6.8e-34 149.1 363 34.4
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 9.2e-31 138.7 236 44.9
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 4.6e-30 136.3 359 31.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.9e-28 131.0 112 61.6
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 4.3e-28 129.8 180 42.8
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 3.3e-20 103.6 115 52.2
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 9.6e-20 102.1 175 39.4
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.6e-19 100.1 146 40.4
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 5.3e-18 96.3 209 36.8
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.7e-16 91.3 131 42.7
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 4.9e-16 89.7 353 25.2
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.9e-14 82.4 158 31.0
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.3e-13 80.9 168 29.8
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.7e-11 73.6 164 29.9
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.8e-10 71.2 98 43.9
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-09 68.6 156 30.1
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-09 68.6 132 32.6
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-09 68.2 156 30.1
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-09 68.2 156 30.1
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-09 68.2 156 30.1
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-09 68.2 156 30.1
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 3.4e-09 67.0 156 29.5
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 3.4e-09 67.0 156 28.8
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 4.5e-09 66.6 156 30.8
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 6.4e-08 62.8 223 27.4
Lj5C98T5 Lonicera japonica HOM05D001735 ORTHO05D001640 1.4e-07 61.6 153 28.8
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 3.2e-07 60.5 226 27.9
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 1.6e-06 58.2 198 25.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.6e-06 58.2 86 43.0
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 1.6e-06 58.2 236 24.6
CDE09G1341 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 2.1e-06 57.8 149 27.5
CSS0016125 Camellia sinensis var. sinensis HOM05D001735 ORTHO05D001640 2.7e-06 57.4 166 27.1
TAR371G0269 Trochodendron aralioides HOM05D001735 ORTHO05D001640 2.7e-06 57.4 222 23.9


User provided reference genes

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