Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 5.9e-83 310.8 159 100.0
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 7.3e-49 197.6 152 71.7
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.6e-48 196.4 151 71.5
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 1.0e-47 193.7 151 70.9
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.8e-47 191.0 152 71.1
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 3.2e-44 182.2 154 70.8
TPR.G13172 Trifolium pratense HOM05D002412 ORTHO05D002516 1.9e-41 172.9 154 69.5
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 1.8e-39 166.4 156 66.0
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 6.6e-34 147.9 161 54.7
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 2.1e-32 142.9 152 56.6
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 1.5e-30 136.7 132 61.4
arahy.Tifrunner.gnm1.ann1.QB6IYV Arachis hypogaea HOM05D002412 ORTHO05D002516 3.5e-27 125.6 166 53.6
Lalb_Chr22g0355701 Lupinus albus HOM05D002412 ORTHO05D002516 2.3e-26 122.9 158 51.3
Phvul.009G072700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.2e-24 114.8 154 47.4
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 6.8e-23 111.3 163 51.5
Glyma.06G047300 Glycine max HOM05D002412 ORTHO05D002516 3.8e-21 105.5 157 45.9
arahy.Tifrunner.gnm1.ann1.3RQF03 Arachis hypogaea HOM05D002412 ORTHO05D002516 8.4e-21 104.4 165 48.5
Lj1g0008942 Lotus japonicus HOM05D002412 ORTHO05D002516 3.9e-18 95.5 162 44.4
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.1e-16 89.7 167 40.7
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 2.8e-16 89.4 161 46.6
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.8e-15 86.7 151 43.7
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.4e-15 86.3 134 47.0
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 3.1e-15 85.9 170 42.4
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.1e-15 85.9 136 44.1
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.1e-15 85.9 120 50.0
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.1e-15 85.9 158 45.6
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 9.0e-15 84.3 144 45.1
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.2e-14 84.0 155 44.5
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.0e-14 83.2 145 43.4
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 2.0e-14 83.2 138 44.2
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 4.4e-14 82.0 156 40.4
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 9.9e-14 80.9 118 50.0
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.7e-13 80.1 132 40.2
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 2.9e-13 79.3 158 41.1
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 6.4e-13 78.2 162 41.4
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.4e-12 77.0 162 40.7
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 1.9e-12 76.6 165 39.4
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 2.4e-12 76.3 158 40.5
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.4e-12 76.3 159 40.3
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 5.4e-12 75.1 130 46.2
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 5.4e-12 75.1 142 40.8
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 7.1e-12 74.7 170 40.6
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 9.3e-12 74.3 135 45.9
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 9.3e-12 74.3 110 47.3
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.2e-11 73.9 170 40.6
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.1e-11 73.2 154 39.6
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.5e-11 72.4 170 39.4
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 3.5e-11 72.4 163 38.0
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 4.6e-11 72.0 147 40.8
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 4.6e-11 72.0 165 37.6
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 6.0e-11 71.6 165 38.8
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 7.9e-11 71.2 156 39.7
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.3e-10 69.7 157 40.8
VMungo0795G0001 Vigna mungo HOM05D002412 ORTHO05D002516 3.0e-10 69.3 131 39.7
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 3.9e-10 68.9 131 43.5
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 3.9e-10 68.9 159 40.9
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 3.9e-10 68.9 143 37.1
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.9e-10 68.9 119 44.5
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 3.9e-10 68.9 163 38.7
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 3.9e-10 68.9 162 36.4
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 6.6e-10 68.2 130 41.5
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 6.6e-10 68.2 162 37.7
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 8.7e-10 67.8 144 39.6
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.7e-10 67.8 159 37.7
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 1.1e-09 67.4 163 37.4
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 1.1e-09 67.4 161 37.9
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.1e-09 67.4 123 43.1
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 1.5e-09 67.0 154 39.0
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.9e-09 66.6 157 38.2
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 1.9e-09 66.6 161 37.9
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.9e-09 66.6 123 43.1
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 1.9e-09 66.6 149 37.6
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 2.5e-09 66.2 163 38.0
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 3.3e-09 65.9 77 53.2
Gohir.A06G024600 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.3e-09 65.5 130 41.5
Gorai.010G026300 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.3e-09 65.5 153 39.2
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 5.6e-09 65.1 127 39.4
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 9.6e-09 64.3 133 39.8
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.3e-08 63.9 134 41.8
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 1.6e-08 63.5 164 39.0
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-08 63.5 134 41.8
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.6e-08 63.5 134 41.8
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.6e-08 63.5 123 39.8
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 1.6e-08 63.5 173 37.0
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 1.6e-08 63.5 160 36.2
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 2.1e-08 63.2 118 39.8
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 2.1e-08 63.2 166 37.3
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 3.6e-08 62.4 128 36.7
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 3.6e-08 62.4 161 37.9
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 3.6e-08 62.4 161 37.3
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 3.6e-08 62.4 176 34.7
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 4.8e-08 62.0 157 35.0
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 4.8e-08 62.0 163 37.4
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 4.8e-08 62.0 154 38.3
Gohir.D06G021700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 6.2e-08 61.6 153 37.9
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 6.2e-08 61.6 170 35.9
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 6.2e-08 61.6 172 34.9
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 6.2e-08 61.6 128 38.3
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 6.2e-08 61.6 162 35.8
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 8.1e-08 61.2 133 39.1
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 8.1e-08 61.2 177 36.2
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 8.1e-08 61.2 115 41.7
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 8.1e-08 61.2 124 39.5
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.1e-07 60.8 138 38.4
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 1.1e-07 60.8 164 35.4
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 1.1e-07 60.8 118 39.8
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.1e-07 60.8 181 35.9
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 1.1e-07 60.8 177 34.5
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 1.4e-07 60.5 134 38.8
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 1.4e-07 60.5 169 37.3
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.4e-07 60.5 162 35.2
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 1.4e-07 60.5 125 36.8
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.8e-07 60.1 163 37.4
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 2.4e-07 59.7 144 39.6
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.1e-07 59.3 150 40.0
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 4.0e-07 58.9 131 39.7
Medtr3g103260 Medicago truncatula HOM05D002412 ORTHO05D002516 4.0e-07 58.9 87 50.6
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 4.0e-07 58.9 156 36.5
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.0e-07 58.9 162 36.4
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 4.0e-07 58.9 93 47.3
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 5.3e-07 58.5 160 35.6
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 6.9e-07 58.2 167 36.5
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 9.0e-07 57.8 127 38.6
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 9.0e-07 57.8 119 47.9
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 9.0e-07 57.8 153 37.3
Sp2g05130 Schrenkiella parvula HOM05D014607 ORTHO05D016575 9.0e-07 57.8 160 36.9
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.2e-06 57.4 163 36.8
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 1.2e-06 57.4 163 36.8
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 1.2e-06 57.4 152 34.2
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 1.5e-06 57.0 83 45.8
RcHm_v2.0_Chr6g0309821 Rosa chinensis HOM05D002412 ORTHO05D002516 1.5e-06 57.0 90 44.4
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.6e-06 56.2 157 35.0
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 2.6e-06 56.2 146 37.7
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 3.4e-06 55.8 161 34.8
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 3.4e-06 55.8 155 36.8
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 3.4e-06 55.8 114 35.1
Thhalv10023721m.g Eutrema salsugineum HOM05D014607 ORTHO05D016575 3.4e-06 55.8 161 36.0
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 3.4e-06 55.8 154 35.1
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 3.4e-06 55.8 127 40.9
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 3.4e-06 55.8 130 40.0
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 4.5e-06 55.5 140 38.6
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 4.5e-06 55.5 97 43.3
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 4.5e-06 55.5 155 36.8
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 4.5e-06 55.5 163 31.9
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 7.6e-06 54.7 161 34.8
MSTRG.1024 Avicennia marina HOM05D002412 ORTHO05D002516 9.9e-06 54.3 126 41.3
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 9.9e-06 54.3 154 35.7


User provided reference genes

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