Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 1.6e-88 329.3 159 100.0
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 7.0e-76 287.3 157 86.6
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.3e-58 229.9 160 76.9
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 7.5e-46 187.6 147 63.9
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.6e-43 179.9 145 60.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.7e-42 176.4 145 61.4
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.4e-39 166.8 155 57.4
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 5.8e-38 161.4 153 56.9
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 1.7e-37 159.8 134 61.9
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 4.0e-31 138.7 160 52.5
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 5.4e-28 128.3 183 45.9
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 6.0e-27 124.8 203 42.4
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 6.0e-27 124.8 158 47.5
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 9.6e-25 117.5 150 46.7
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 6.2e-24 114.8 145 49.0
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 6.2e-24 114.8 145 46.2
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.1e-24 114.4 146 51.4
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 8.1e-24 114.4 152 44.7
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.8e-23 113.2 149 47.0
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 4.0e-23 112.1 149 47.0
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.0e-22 109.8 147 46.3
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.9e-21 105.9 113 54.9
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.9e-21 105.9 144 44.4
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 8.4e-21 104.4 148 43.9
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-20 103.2 145 44.1
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.4e-20 102.8 178 38.2
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 4.2e-20 102.1 146 43.2
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.2e-20 102.1 145 45.5
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 4.2e-20 102.1 149 44.3
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.4e-20 101.7 146 46.6
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 7.1e-20 101.3 145 43.4
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.1e-20 101.3 148 45.3
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.6e-19 100.1 139 45.3
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 6.0e-19 98.2 145 42.1
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 5.1e-18 95.1 152 40.1
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.5e-17 93.6 146 39.7
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.9e-17 93.2 177 34.5
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 1.9e-17 93.2 143 42.0
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.9e-17 93.2 148 40.5
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.3e-17 92.4 149 40.9
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 5.6e-17 91.7 152 34.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 7.3e-17 91.3 153 43.1
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.1e-16 89.7 95 50.5
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 2.8e-16 89.4 146 35.6
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.8e-16 89.4 147 38.8
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 8.1e-16 87.8 154 39.0
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 8.1e-16 87.8 147 38.8
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 1.1e-15 87.4 145 37.2
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.4e-15 87.0 156 41.7
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 2.4e-15 86.3 148 41.2
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 4.0e-15 85.5 151 37.1
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 4.0e-15 85.5 155 38.1
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 5.3e-15 85.1 148 40.5
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.5e-14 83.6 154 40.3
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 1.5e-14 83.6 151 36.4
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.5e-14 83.6 156 38.5
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 2.0e-14 83.2 162 40.7
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 2.6e-14 82.8 148 37.2
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-14 82.8 146 38.4
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-14 82.8 146 38.4
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.8e-14 81.6 149 38.9
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.6e-14 81.3 99 44.4
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 7.6e-14 81.3 146 39.0
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 9.9e-14 80.9 152 37.5
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-13 80.5 146 37.7
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.7e-13 80.1 164 34.8
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.7e-13 80.1 164 34.8
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.2e-13 79.7 147 36.1
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.9e-13 79.3 155 34.8
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.8e-13 79.0 144 35.4
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 4.9e-13 78.6 108 43.5
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.9e-13 78.6 144 35.4
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 6.4e-13 78.2 146 37.7
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 6.4e-13 78.2 166 33.1
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.1e-12 77.4 142 33.8
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.4e-12 77.0 166 33.1
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.9e-12 76.6 166 33.1
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-12 76.6 144 34.7
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-12 76.6 163 37.4
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.4e-12 76.3 145 38.6
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 3.2e-12 75.9 152 37.5
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 3.2e-12 75.9 148 37.8
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 7.1e-12 74.7 103 42.7
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 7.1e-12 74.7 142 33.8
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 1.2e-11 73.9 148 37.2
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 1.6e-11 73.6 162 34.0
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 1.6e-11 73.6 166 32.5
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.7e-11 72.8 150 36.7
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 4.6e-11 72.0 149 32.9
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 4.6e-11 72.0 149 33.6
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 7.9e-11 71.2 177 31.6
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.9e-11 71.2 151 37.1
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 1.0e-10 70.9 146 35.6
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.0e-10 70.9 142 38.7
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 1.0e-10 70.9 156 34.0
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.7e-10 70.1 142 38.7
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 2.3e-10 69.7 149 36.2
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.3e-10 69.7 145 36.6
Phvul.009G074000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.3e-10 69.7 134 37.3
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 3.0e-10 69.3 136 35.3
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.0e-10 69.3 149 36.2
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 6.6e-10 68.2 145 33.1
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.7e-10 67.8 147 36.1
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.1e-09 67.4 149 34.2
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.5e-09 67.0 147 35.4
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.9e-09 66.6 145 35.2
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-09 66.6 142 38.0
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.3e-09 65.9 147 34.7
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.3e-09 65.5 150 33.3
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 4.3e-09 65.5 160 31.2
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 5.6e-09 65.1 88 43.2
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 7.3e-09 64.7 145 37.2
Sc02g0008110 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.8e-08 62.8 148 33.1
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 4.8e-08 62.0 149 32.9
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.2e-08 61.6 150 34.7
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 6.2e-08 61.6 145 33.8
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 8.1e-08 61.2 104 34.6
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 8.1e-08 61.2 149 34.2
unitig_749.g13883 Utricularia gibba HOM05D005317 ORTHO05D005146 8.1e-08 61.2 126 32.5
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 1.4e-07 60.5 159 32.7
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.8e-07 60.1 169 32.0
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.0e-07 58.9 152 31.6
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 9.0e-07 57.8 151 31.8
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.2e-06 57.4 170 30.6
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 1.5e-06 57.0 145 32.4
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.0e-06 56.6 167 32.3
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-06 56.6 85 45.9
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.6e-06 56.2 111 38.7
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 2.6e-06 56.2 154 29.9
HPP92_015703 Vanilla planifolia HOM05D066124 ORTHO05D051582 3.4e-06 55.8 147 29.9
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 9.9e-06 54.3 96 37.5


User provided reference genes

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