Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 2.1e-146 522.3 265 100.0
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 7.0e-113 411.0 260 83.5
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 1.3e-111 406.8 256 84.8
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 6.1e-109 397.9 255 82.7
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 9.1e-97 357.5 257 73.2
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 5.0e-87 325.1 262 69.5
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 2.5e-86 322.8 253 68.8
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 1.6e-85 320.1 242 70.7
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 4.4e-83 312.0 243 69.1
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 1.2e-80 303.9 239 65.7
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 2.3e-79 299.7 237 65.0
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 6.6e-79 298.1 240 65.0
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 9.5e-78 294.3 230 63.0
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 1.2e-77 293.9 257 61.1
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 4.7e-77 292.0 259 61.0
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.8e-76 290.0 228 64.0
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 4.0e-76 288.9 258 60.5
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 8.9e-76 287.7 260 59.6
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 2.6e-75 286.2 202 68.8
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.3e-74 283.9 254 59.4
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 4.9e-74 282.0 266 59.0
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 4.1e-73 278.9 271 58.3
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 5.4e-73 278.5 240 60.8
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 1.6e-72 276.9 256 60.2
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 2.7e-72 276.2 243 59.7
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 2.3e-71 273.1 220 66.4
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 2.3e-71 273.1 263 56.3
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 3.9e-71 272.3 267 56.2
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 5.1e-71 271.9 251 61.8
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 3.3e-70 269.2 255 57.6
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 4.3e-70 268.9 240 58.8
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.2e-69 267.3 260 57.7
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 2.8e-69 266.2 238 58.4
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 4.7e-69 265.4 210 65.2
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 1.1e-68 264.2 238 56.3
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 1.4e-68 263.8 243 56.8
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 1.8e-68 263.5 238 57.6
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 2.3e-68 263.1 239 56.9
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 5.2e-68 261.9 237 57.4
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 1.2e-67 260.8 239 58.2
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 1.2e-67 260.8 273 55.7
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 1.2e-67 260.8 239 56.1
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 2.6e-67 259.6 250 57.2
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 1.3e-66 257.3 284 50.7
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 1.3e-66 257.3 247 59.1
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 2.2e-66 256.5 246 56.9
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 2.9e-66 256.1 239 56.1
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 6.4e-66 255.0 255 52.9
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 6.4e-66 255.0 240 58.3
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 6.4e-66 255.0 246 57.3
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 1.9e-65 253.4 260 55.0
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 3.2e-65 252.7 188 66.0
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 4.1e-65 252.3 249 56.6
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 7.1e-65 251.5 243 59.7
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 7.1e-65 251.5 238 54.6
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 7.1e-65 251.5 171 71.3
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 9.2e-65 251.1 203 61.6
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 3.5e-64 249.2 259 54.4
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 4.6e-64 248.8 250 54.8
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 1.3e-63 247.3 255 52.5
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 1.7e-63 246.9 264 53.8
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.7e-63 246.9 262 53.4
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 1.7e-63 246.9 263 56.3
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 1.7e-63 246.9 172 72.1
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 3.0e-63 246.1 210 63.8
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 5.1e-63 245.4 265 53.2
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 2.5e-62 243.0 251 53.4
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 7.3e-62 241.5 169 72.2
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 7.3e-62 241.5 276 49.6
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 1.2e-61 240.7 276 48.9
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 2.8e-61 239.6 262 53.8
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 3.6e-61 239.2 223 59.2
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 4.7e-61 238.8 328 47.0
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 4.7e-61 238.8 185 63.8
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 1.4e-60 237.3 243 55.6
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 1.4e-60 237.3 185 63.2
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 2.6e-59 233.0 270 52.6
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 2.6e-59 233.0 249 50.6
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 5.8e-59 231.9 210 59.5
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 9.9e-59 231.1 246 53.7
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 4.9e-58 228.8 253 52.6
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 6.4e-58 228.4 248 52.0
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 8.4e-58 228.0 171 64.3
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 9.2e-57 224.6 251 51.0
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 2.1e-56 223.4 225 53.8
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 1.7e-55 220.3 206 56.3
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 6.6e-55 218.4 260 49.6
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 2.5e-54 216.5 177 61.6
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 5.6e-54 215.3 245 50.6
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 8.1e-53 211.5 205 53.7
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 1.1e-52 211.1 185 59.5
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 1.1e-52 211.1 255 47.8
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 3.1e-52 209.5 251 48.2
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 1.2e-48 197.6 158 63.3
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 1.3e-47 194.1 180 57.2
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 7.3e-46 188.3 207 51.7
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 6.9e-44 181.8 188 56.4
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 2.4e-41 173.3 194 46.9
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 9.3e-41 171.4 129 62.8
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 2.5e-38 163.3 175 45.7
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 7.4e-38 161.8 195 43.6
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 1.6e-32 144.1 83 86.7
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-31 140.2 171 43.9
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 1.9e-30 137.1 171 50.3
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 6.2e-29 132.1 81 75.3
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 4.0e-28 129.4 159 51.6
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 4.2e-25 119.4 164 41.5
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 2.8e-21 106.7 75 65.3
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 2.2e-13 80.5 135 38.5
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.6e-11 73.6 42 83.3


User provided reference genes

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