Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.5e-116 422.2 215 100.0
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 8.2e-88 327.4 216 80.6
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 4.1e-87 325.1 220 81.8
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 2.2e-80 302.8 224 74.6
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.7e-78 295.8 211 75.4
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.2e-75 287.0 213 72.3
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.4e-73 278.5 213 69.5
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.8e-71 273.1 202 71.8
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 5.4e-71 271.6 222 66.2
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 2.7e-70 269.2 240 64.6
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 2.7e-70 269.2 220 66.4
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 4.5e-70 268.5 210 69.0
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 4.5e-70 268.5 220 66.8
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 4.5e-70 268.5 218 69.3
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 7.7e-70 267.7 231 64.1
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.1e-68 263.8 214 66.8
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 5.5e-68 261.5 235 62.6
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 7.2e-68 261.2 235 62.6
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 7.2e-68 261.2 205 67.3
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.2e-67 260.4 224 63.4
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 2.1e-67 259.6 230 63.0
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.1e-67 259.6 214 65.9
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 6.1e-67 258.1 231 62.3
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 6.1e-67 258.1 219 65.3
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.0e-66 257.3 223 61.9
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 6.8e-66 254.6 230 60.9
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 6.8e-66 254.6 231 61.9
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 3.4e-65 252.3 233 61.4
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.7e-65 251.5 225 60.4
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 5.7e-65 251.5 221 62.4
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.2e-64 249.6 219 60.7
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 4.9e-64 248.4 212 66.0
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.4e-63 246.9 205 65.4
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-63 246.5 209 63.6
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 5.4e-63 245.0 236 59.7
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 7.0e-63 244.6 233 62.7
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.0e-62 243.0 226 59.3
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.0e-62 243.0 213 64.3
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 2.0e-62 243.0 220 61.8
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.5e-62 242.3 228 61.4
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 3.5e-62 242.3 228 61.4
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.0e-61 240.7 221 61.1
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.8e-61 238.8 228 61.0
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 5.0e-61 238.4 224 60.7
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.6e-61 238.0 229 58.5
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 6.6e-61 238.0 226 57.5
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 8.6e-61 237.7 234 59.4
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.1e-60 237.3 218 61.0
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.9e-60 236.5 222 63.1
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.9e-60 236.5 217 59.9
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.9e-60 236.5 215 60.5
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.9e-60 236.5 223 57.4
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 2.5e-60 236.1 220 60.5
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 4.3e-60 235.3 211 60.2
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 5.6e-60 235.0 238 58.0
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 5.6e-60 235.0 222 61.3
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.6e-60 235.0 229 57.2
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 5.6e-60 235.0 228 59.6
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 9.5e-60 234.2 236 58.5
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 9.5e-60 234.2 246 54.9
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.2e-59 233.8 236 58.5
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.2e-59 233.8 220 60.9
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 1.6e-59 233.4 228 59.6
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 2.1e-59 233.0 217 59.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.6e-59 232.3 223 57.8
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 6.1e-59 231.5 221 57.0
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 8.0e-59 231.1 222 58.1
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.0e-58 230.7 223 58.7
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.4e-58 230.3 238 55.9
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.4e-58 230.3 229 55.5
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 3.0e-58 229.2 220 58.6
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 4.0e-58 228.8 215 59.5
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.2e-58 228.4 232 57.3
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.2e-57 227.3 228 55.7
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.5e-57 226.9 191 63.9
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.0e-57 226.5 218 57.8
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 5.7e-57 224.9 228 58.3
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 5.7e-57 224.9 228 55.3
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.7e-56 223.4 219 57.5
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 2.9e-56 222.6 238 55.0
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.4e-55 220.3 234 54.3
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.4e-55 219.5 202 57.9
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.4e-55 219.5 202 57.9
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 2.4e-55 219.5 234 54.3
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 3.2e-55 219.2 362 42.0
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 7.0e-55 218.0 220 57.7
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 7.0e-55 218.0 221 56.1
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 9.2e-55 217.6 234 55.1
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 9.2e-55 217.6 215 58.1
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.0e-54 216.5 202 57.4
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 2.0e-54 216.5 219 55.7
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 3.5e-54 215.7 227 55.5
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 4.6e-54 215.3 224 55.8
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 7.8e-54 214.5 346 41.3
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.0e-53 214.2 227 55.1
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.3e-53 213.8 170 67.6
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 1.7e-53 213.4 170 68.8
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 2.3e-53 213.0 171 66.1
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 6.6e-53 211.5 228 53.9
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 6.6e-53 211.5 222 52.3
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 5.6e-52 208.4 251 51.8
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 9.5e-52 207.6 194 57.7
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 8.0e-51 204.5 214 54.7
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 8.0e-51 204.5 165 66.1
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.3e-50 203.0 167 64.1
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 6.8e-50 201.4 228 53.9
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 5.8e-49 198.4 220 52.3
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 8.3e-48 194.5 177 59.9
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.1e-47 194.1 215 54.0
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.1e-47 194.1 226 51.3
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 1.2e-46 190.7 226 50.4
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 2.7e-46 189.5 134 73.9
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.7e-46 189.5 263 47.5
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.7e-46 189.5 224 49.6
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 7.8e-46 188.0 162 63.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 3.9e-45 185.7 168 62.5
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 5.0e-45 185.3 179 59.2
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 1.5e-44 183.7 183 56.8
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.9e-44 183.3 300 42.3
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 1.6e-43 180.3 149 64.4
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.6e-43 180.3 205 49.8
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 1.4e-42 177.2 168 57.7
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 5.2e-42 175.3 234 47.9
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 3.4e-41 172.6 214 50.5
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 5.4e-39 165.2 166 55.4
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 4.6e-38 162.2 214 49.5
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 7.8e-38 161.4 200 47.5
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.0e-37 161.0 135 65.2
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.7e-37 160.2 174 55.7
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 2.5e-36 156.4 163 54.6
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 4.3e-36 155.6 163 54.6
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 4.3e-36 155.6 163 54.6
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.4e-33 146.0 175 50.3
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 9.9e-33 144.4 215 44.2
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 1.1e-28 131.0 102 72.5
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 8.1e-27 124.8 183 47.0
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 4.0e-26 122.5 186 44.1
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 8.7e-21 104.8 181 38.7
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.8e-19 99.8 91 62.6
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.7e-16 90.5 165 40.6
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.2e-16 90.1 72 63.9
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 4.9e-16 89.0 155 36.1
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 2.3e-13 80.1 64 65.6
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 3.9e-13 79.3 246 29.3
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.5e-12 76.6 83 53.0
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 9.6e-12 74.7 55 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.1e-11 73.6 167 34.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.0e-10 69.3 82 51.2
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 6.9e-10 68.6 67 64.2
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 9.0e-10 68.2 184 32.1
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.2e-09 67.8 70 57.1
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.0e-09 67.0 43 74.4
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 9.3e-07 58.2 62 43.5
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 1.6e-06 57.4 61 49.2
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 2.1e-06 57.0 62 43.5
Nitab4.5_0000621g0080 Nicotiana tabacum HOM05D000175 ORTHO05D000481 2.1e-06 57.0 62 41.9
Solyc07g053615.1 Solanum lycopersicum HOM05D000175 ORTHO05D000481 2.1e-06 57.0 62 41.9
Sopen07g027570 Solanum pennellii HOM05D000175 ORTHO05D000481 2.1e-06 57.0 62 41.9
PGSC0003DMG400009379 Solanum tuberosum HOM05D000175 ORTHO05D000481 2.1e-06 57.0 62 41.9
CARHR211770 Cardamine hirsuta HOM05D000175 ORTHO05D000481 3.5e-06 56.2 62 45.2
FAN02G1072 Fragaria x ananassa HOM05D000175 ORTHO05D000481 3.5e-06 56.2 62 43.5
Solyc02g077670.3 Solanum lycopersicum HOM05D000175 ORTHO05D000481 3.5e-06 56.2 62 43.5
Sopen02g022570 Solanum pennellii HOM05D000175 ORTHO05D000481 3.5e-06 56.2 62 43.5
PGSC0003DMG400031750 Solanum tuberosum HOM05D000175 ORTHO05D000481 3.5e-06 56.2 62 43.5
Aqoxy1G02281 Aquilegia oxysepala HOM05D000175 ORTHO05D000481 4.6e-06 55.8 62 41.9
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 4.6e-06 55.8 61 45.9
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 4.6e-06 55.8 62 41.9
Pp3c7_9780 Physcomitrium patens HOM05D028695 ORTHO05D026632 4.6e-06 55.8 92 41.3
CAN.G209.2 Capsicum annuum HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 41.9
AUR62024840 Chenopodium quinoa HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 43.5
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 40.3
Oeu050925.1 Olea europaea HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 41.9
PGR042G2661 Punica granatum HOM05D000175 ORTHO05D000481 6.0e-06 55.5 62 41.9
EL10Ac2g02540 Beta vulgaris HOM05D000175 ORTHO05D000481 7.9e-06 55.1 62 43.5
Haze_21622 Corylus avellana HOM05D000175 ORTHO05D010751 7.9e-06 55.1 62 43.5
Lalb_Chr25g0289171 Lupinus albus HOM05D005011 ORTHO05D006443 7.9e-06 55.1 62 41.9
Sp6g40700 Schrenkiella parvula HOM05D000175 ORTHO05D000481 7.9e-06 55.1 62 43.5
unitig_749.g14168 Utricularia gibba HOM05D000175 ORTHO05D000481 7.9e-06 55.1 62 43.5


User provided reference genes

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