Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 7.7e-172 607.1 307 100.0
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 6.1e-145 517.7 307 86.0
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 3.8e-139 498.4 309 82.8
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 7.1e-117 424.5 320 69.4
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 3.1e-112 409.1 326 66.3
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 4.4e-111 405.2 320 67.2
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 1.1e-109 400.6 320 66.9
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.9e-109 399.8 322 67.1
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 7.1e-109 397.9 323 65.6
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 1.6e-108 396.7 323 65.9
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 3.4e-95 352.4 327 58.1
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 5.4e-93 345.1 323 57.3
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 9.3e-93 344.4 319 58.6
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 1.2e-92 344.0 323 57.3
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 3.5e-92 342.4 325 56.6
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 4.6e-92 342.0 319 56.7
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 4.6e-92 342.0 312 59.3
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 7.9e-92 341.3 328 55.5
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 1.7e-91 340.1 320 57.8
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 2.3e-91 339.7 324 54.0
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 2.3e-91 339.7 323 56.3
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 3.0e-91 339.3 319 56.1
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 5.1e-91 338.6 325 56.0
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 2.8e-89 332.8 323 55.4
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 3.6e-89 332.4 325 54.5
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 1.1e-88 330.9 328 53.7
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 5.3e-88 328.6 320 55.9
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 1.2e-87 327.4 323 55.1
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 1.5e-87 327.0 239 69.5
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 5.8e-87 325.1 322 50.9
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 1.7e-86 323.6 319 50.8
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 2.2e-86 323.2 362 50.8
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 2.9e-86 322.8 328 53.4
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 2.9e-86 322.8 324 54.9
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 6.4e-86 321.6 193 82.4
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 8.4e-86 321.2 324 52.2
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 8.4e-86 321.2 324 52.2
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 1.4e-85 320.5 322 50.0
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.9e-85 320.1 324 54.9
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 1.9e-85 320.1 315 55.9
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 2.4e-85 319.7 324 51.9
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 3.2e-85 319.3 324 51.5
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 4.2e-85 318.9 322 53.1
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 7.1e-85 318.2 323 52.0
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 7.1e-85 318.2 328 50.3
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 1.0e-83 314.3 326 51.2
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.8e-83 313.5 325 52.3
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 5.1e-83 312.0 322 51.9
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 5.1e-83 312.0 320 51.9
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 6.7e-83 311.6 324 51.5
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 4.3e-82 308.9 319 52.4
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 1.3e-81 307.4 320 52.5
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 3.7e-81 305.8 321 52.6
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.1e-80 304.3 318 53.1
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 1.1e-80 304.3 321 51.4
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 1.1e-80 304.3 320 50.6
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 1.8e-80 303.5 320 51.6
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 1.2e-79 300.8 321 51.7
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 2.0e-79 300.1 324 52.5
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 2.6e-79 299.7 335 49.0
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 3.4e-79 299.3 323 50.2
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.3e-78 297.4 315 52.1
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 8.4e-78 294.7 394 45.2
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 1.4e-77 293.9 319 51.1
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 5.5e-77 292.0 320 49.1
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 1.2e-76 290.8 320 50.3
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.2e-76 290.8 321 51.1
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.1e-76 290.0 323 51.1
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 2.1e-76 290.0 320 50.6
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 2.1e-76 290.0 322 49.1
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 4.6e-76 288.9 327 49.8
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 1.0e-75 287.7 320 50.0
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 1.0e-75 287.7 321 49.8
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 1.3e-75 287.3 324 49.1
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 6.7e-75 285.0 322 49.4
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 3.3e-74 282.7 320 49.4
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 4.3e-74 282.3 325 49.2
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 2.8e-73 279.6 321 48.9
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 4.8e-73 278.9 320 48.8
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 1.4e-72 277.3 321 48.6
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 1.5e-71 273.9 329 46.8
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 4.5e-71 272.3 442 39.8
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 1.7e-70 270.4 323 47.4
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.0e-70 268.9 318 47.5
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 1.6e-68 263.8 332 46.4
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 6.1e-68 261.9 234 56.8
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 7.9e-68 261.5 320 46.2
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 1.3e-67 260.8 331 46.5
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 1.1e-66 257.7 327 46.8
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.5e-66 257.3 327 46.8
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 2.5e-66 256.5 307 48.5
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 3.3e-66 256.1 321 46.1
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 3.7e-65 252.7 259 55.6
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.3e-64 248.8 342 43.3
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 9.1e-64 248.1 318 45.6
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 4.5e-63 245.7 274 48.9
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 1.7e-62 243.8 228 55.3
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 3.8e-62 242.7 323 46.4
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 6.5e-62 241.9 258 50.4
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.0e-59 234.6 271 50.2
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 4.4e-58 229.2 234 50.0
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.3e-57 227.6 276 44.6
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.1e-56 223.0 279 48.7
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 4.1e-56 222.6 275 46.9
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 4.5e-55 219.2 292 43.2
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 7.7e-55 218.4 390 36.9
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 8.5e-54 214.9 343 41.1
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 7.2e-53 211.8 335 38.8
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 1.0e-51 208.0 301 42.9
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.0e-51 208.0 319 41.1
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 8.8e-51 204.9 278 43.9
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 1.5e-50 204.1 340 37.1
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 3.7e-49 199.5 226 46.9
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.1e-48 198.0 323 35.9
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 2.4e-48 196.8 166 59.0
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 2.5e-45 186.8 315 36.8
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 9.4e-45 184.9 331 35.3
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.0e-43 181.4 331 36.0
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 2.3e-43 180.3 307 37.5
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 4.5e-39 166.0 313 35.8
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 9.1e-32 141.7 229 39.3
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.6e-31 141.0 255 37.6
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 3.7e-17 93.2 55 76.4
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 2.9e-09 67.0 46 73.9
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 2.9e-09 67.0 46 73.9
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 4.1e-08 63.2 46 65.2
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 7.0e-08 62.4 46 65.2
Cre06.g285850 Chlamydomonas reinhardtii HOM05D006276 ORTHO05D007724 8.6e-06 55.5 81 35.8


User provided reference genes

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