Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.5e-184 649.4 344 100.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.3e-172 609.8 345 93.9
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.3e-172 609.0 343 93.3
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.3e-167 593.2 346 92.2
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.7e-159 566.2 344 87.8
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.2e-158 562.0 346 86.7
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.1e-157 559.3 347 85.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 4.6e-157 558.1 352 86.1
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.6e-154 549.7 359 83.0
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 5.8e-152 541.2 338 85.2
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 2.2e-151 539.3 347 84.1
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 5.6e-147 524.6 310 89.7
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 9.6e-147 523.9 347 79.5
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 2.8e-146 522.3 347 79.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.1e-145 520.4 347 78.7
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.4e-145 520.0 344 79.4
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.5e-144 516.5 344 78.5
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.6e-144 515.8 338 82.0
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 9.9e-144 513.8 349 77.7
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.7e-143 513.1 347 76.9
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.7e-143 513.1 347 78.1
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 2.2e-143 512.7 346 77.5
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.4e-142 510.0 347 76.9
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.4e-142 509.2 344 77.9
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 4.2e-142 508.4 344 78.2
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 7.1e-142 507.7 347 76.7
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 9.3e-142 507.3 347 75.5
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 3.5e-141 505.4 346 76.9
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.5e-141 505.4 347 76.7
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.6e-141 505.0 347 76.7
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 6.0e-141 504.6 310 87.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.3e-140 503.4 347 77.2
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.3e-140 503.4 347 76.4
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.7e-140 503.1 348 76.4
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 3.0e-140 502.3 347 75.2
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 75.5
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 3.9e-140 501.9 346 80.6
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.6e-140 501.1 347 74.6
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.1e-139 500.4 347 75.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 7.3e-139 497.7 346 75.4
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 7.3e-139 497.7 347 75.2
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 9.6e-139 497.3 347 75.5
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.6e-138 496.5 347 75.2
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.6e-138 496.5 347 75.8
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.6e-138 496.5 347 75.8
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 8.1e-138 494.2 345 74.8
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.1e-137 493.8 347 74.4
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.1e-137 493.8 347 73.8
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.4e-137 493.4 347 74.6
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.4e-137 493.4 347 74.6
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.4e-137 492.7 347 74.4
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.0e-137 491.9 346 74.6
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 5.3e-137 491.5 347 74.6
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 9.0e-137 490.7 344 75.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.2e-136 490.3 346 74.6
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.5e-136 490.0 347 73.2
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 3.4e-136 488.8 345 72.2
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 3.4e-136 488.8 345 72.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 5.8e-136 488.0 345 72.2
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 5.8e-136 488.0 345 71.9
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 5.8e-136 488.0 347 74.4
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 5.8e-136 488.0 345 73.0
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.3e-135 486.9 345 73.0
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 1.3e-135 486.9 345 74.8
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.3e-135 486.9 350 74.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.2e-135 486.1 273 92.7
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 4.9e-135 485.0 348 74.1
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 6.4e-135 484.6 345 72.5
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 8.4e-135 484.2 357 73.7
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 1.1e-134 483.8 347 74.4
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.9e-134 483.0 348 73.9
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 3.2e-134 482.3 345 71.6
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 3.2e-134 482.3 345 71.6
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 9.3e-134 480.7 345 71.3
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 9.3e-134 480.7 345 71.3
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 9.3e-134 480.7 345 71.3
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.6e-133 479.9 343 73.5
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 2.7e-133 479.2 345 71.3
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.7e-133 479.2 345 71.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 2.7e-133 479.2 357 69.5
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.5e-133 478.8 345 71.9
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 3.9e-132 475.3 336 75.3
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 5.1e-132 474.9 345 71.0
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 1.9e-131 473.0 357 68.6
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.9e-131 473.0 348 71.6
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.9e-131 473.0 339 74.0
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 4.3e-131 471.9 342 73.1
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 5.6e-131 471.5 326 75.5
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 7.4e-131 471.1 347 76.1
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.3e-130 470.3 394 66.2
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.1e-130 469.5 345 71.9
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 9.0e-129 464.2 369 68.6
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.2e-128 463.8 344 71.5
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.8e-128 461.5 344 74.7
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 6.5e-127 458.0 273 83.2
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.2e-125 453.8 344 73.8
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.6e-125 451.8 307 77.2
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 7.9e-125 451.1 312 76.3
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 7.4e-123 444.5 415 61.2
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 3.5e-117 425.6 338 69.2
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 4.6e-117 425.2 340 65.0
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 9.0e-113 411.0 297 75.1
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.2e-112 410.6 396 60.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 4.5e-112 408.7 330 65.5
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 4.6e-109 398.7 345 63.5
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.6e-104 382.9 420 55.0
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.9e-103 379.4 347 65.1
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 7.9e-101 371.3 223 82.5
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 7.4e-99 364.8 223 80.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.8e-97 360.1 296 66.2
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.2e-96 357.5 345 59.1
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 4.0e-92 342.4 247 71.7
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 1.1e-89 334.3 386 50.3
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.1e-89 332.4 205 82.0
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.8e-81 307.0 397 51.6
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 4.2e-78 295.8 325 49.5
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.2e-77 294.3 346 52.6
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 5.4e-73 278.9 170 80.6
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 8.6e-71 271.6 251 60.2
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.8e-69 266.5 251 59.0
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 9.2e-65 251.5 201 64.7
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 6.6e-63 245.4 311 44.4
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 6.2e-61 238.8 251 53.0
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 6.8e-52 208.8 185 65.9
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 5.8e-51 205.7 145 74.5
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 5.8e-51 205.7 239 51.9
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 7.5e-51 205.3 155 66.5
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 9.8e-51 204.9 145 69.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 6.4e-50 202.2 338 38.2
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 3.3e-46 189.9 165 64.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.4e-44 184.5 131 73.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.9e-42 176.8 110 80.0
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 4.6e-40 169.5 331 33.8
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.3e-39 167.9 336 34.8
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 4.3e-38 162.9 338 33.1
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.7e-32 143.7 113 68.1
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 3.3e-30 136.7 125 65.6
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 1.4e-28 131.3 107 72.9
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 6.9e-28 129.0 74 85.1
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 4.8e-21 106.3 73 69.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.4e-20 104.8 95 62.1
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.3e-15 87.4 96 56.2
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 3.3e-06 57.0 38 73.7


User provided reference genes

Program Settings