Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.4e-54 216.1 112 100.0
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 2.5e-48 195.3 112 90.2
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 3.1e-46 188.3 113 88.5
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 5.7e-40 167.5 112 75.9
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 6.3e-39 164.1 103 83.5
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 6.9e-38 160.6 112 76.8
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 1.5e-37 159.5 112 73.2
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 6.1e-34 147.5 112 68.8
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 1.0e-33 146.7 114 67.5
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 7.4e-32 140.6 112 66.1
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 9.1e-30 133.7 103 64.1
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 1.2e-29 133.3 112 60.7
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 2.6e-29 132.1 113 61.9
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 2.6e-29 132.1 103 63.1
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 3.4e-29 131.7 112 59.8
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 4.5e-29 131.3 92 73.9
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.3e-28 129.8 112 61.6
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 2.2e-28 129.0 112 61.6
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 3.8e-28 128.3 104 59.6
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 5.0e-28 127.9 112 59.8
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 5.0e-28 127.9 112 59.8
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 6.5e-28 127.5 112 59.8
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.1e-27 126.7 111 57.7
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.4e-27 126.3 113 61.1
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 1.4e-27 126.3 110 59.1
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.5e-27 125.6 99 62.6
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 3.2e-27 125.2 112 58.9
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.2e-27 125.2 110 58.2
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 5.5e-27 124.4 105 60.0
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 5.5e-27 124.4 113 58.4
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 2.1e-26 122.5 93 65.6
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 2.7e-26 122.1 108 57.4
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 3.6e-26 121.7 103 58.3
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 2.3e-25 119.0 111 58.6
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.0e-25 118.6 101 57.4
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 3.0e-25 118.6 101 57.4
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.1e-24 116.7 103 57.3
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 2.0e-24 115.9 102 58.8
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.3e-24 115.2 101 56.4
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.7e-23 112.8 99 56.6
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 2.2e-23 112.5 106 53.8
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 2.8e-23 112.1 105 53.3
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 6.3e-23 110.9 102 56.9
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 6.3e-23 110.9 113 58.4
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 8.2e-23 110.5 104 56.7
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 7.0e-22 107.5 110 52.7
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 9.1e-22 107.1 108 54.6
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 9.1e-22 107.1 108 54.6
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 2.6e-21 105.5 108 51.9
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 3.5e-21 105.1 103 53.4
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 3.5e-21 105.1 88 59.1
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 4.5e-21 104.8 106 52.8
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 7.7e-21 104.0 100 51.0
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.3e-20 103.2 110 56.4
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.3e-20 103.2 102 52.9
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 1.3e-20 103.2 99 54.5
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 2.2e-20 102.4 109 51.4
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 2.2e-20 102.4 100 51.0
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 2.2e-20 102.4 100 51.0
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 2.2e-20 102.4 100 51.0
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 2.9e-20 102.1 109 49.5
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 3.8e-20 101.7 99 51.5
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 3.8e-20 101.7 98 54.1
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 5.0e-20 101.3 100 56.0
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.1e-19 100.1 100 56.0
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.9e-19 99.4 77 66.2
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.9e-19 99.4 110 49.1
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 2.5e-19 99.0 100 53.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 2.5e-19 99.0 100 53.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 2.5e-19 99.0 100 53.0
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 2.5e-19 99.0 100 53.0
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 2.5e-19 99.0 99 50.5
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 2.5e-19 99.0 95 56.8
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 3.2e-19 98.6 100 48.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 3.2e-19 98.6 106 48.1
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 4.2e-19 98.2 100 53.0
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 7.2e-19 97.4 103 50.5
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 7.2e-19 97.4 76 64.5
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 2.7e-18 95.5 110 50.9
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 6.1e-18 94.4 105 46.7
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 1.8e-17 92.8 109 45.9
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-17 92.4 108 47.2
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 2.3e-17 92.4 102 49.0
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 1.2e-16 90.1 106 46.2
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.0e-16 89.4 105 47.6
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 5.7e-16 87.8 77 57.1
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 7.5e-16 87.4 102 48.0
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.3e-15 86.7 112 46.4
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 3.1e-14 82.0 100 46.0
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 4.1e-14 81.6 105 43.8
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 5.3e-14 81.3 103 46.6
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 3.5e-13 78.6 100 45.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 3.5e-13 78.6 100 44.0
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 3.5e-13 78.6 111 43.2
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 4.2e-11 71.6 101 42.6
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.6e-10 68.6 67 52.2
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 2.3e-09 65.9 144 34.7


User provided reference genes

Program Settings