Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 3.9e-180 634.8 352 100.0
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 2.4e-108 396.4 355 72.4
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 3.2e-65 253.1 359 52.1
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.2e-65 251.9 358 49.4
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 9.4e-65 251.5 344 52.9
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 6.1e-64 248.8 349 50.4
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.0e-62 243.8 358 52.8
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 3.3e-62 243.0 358 50.6
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 3.3e-62 243.0 347 48.4
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 2.2e-61 240.4 322 54.3
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.8e-60 237.3 267 57.7
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.8e-60 237.3 350 50.6
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.6e-59 234.2 364 48.9
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 5.0e-58 229.2 347 51.3
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 7.2e-57 225.3 364 47.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 7.2e-57 225.3 367 48.8
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 7.2e-57 225.3 339 49.9
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 2.7e-56 223.4 350 47.7
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 6.1e-56 222.2 364 47.5
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 2.3e-55 220.3 347 48.7
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 3.0e-55 219.9 359 47.4
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 4.0e-55 219.5 341 52.2
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 4.0e-55 219.5 359 46.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 8.8e-55 218.4 362 48.3
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.2e-53 213.8 352 48.3
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.7e-53 213.0 361 46.8
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 4.8e-53 212.6 363 47.1
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 6.3e-53 212.2 353 49.9
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 8.2e-53 211.8 361 46.8
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 8.2e-53 211.8 361 46.3
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.8e-52 210.7 357 47.1
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 2.4e-52 210.3 357 46.5
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 5.3e-52 209.1 370 46.5
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 3.5e-51 206.5 358 46.6
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 3.5e-51 206.5 351 46.7
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 5.9e-51 205.7 346 45.1
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.9e-50 203.4 361 46.0
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.9e-49 200.7 370 47.3
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 5.5e-49 199.1 376 46.5
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 7.2e-49 198.7 290 51.7
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 5.2e-47 192.6 366 45.1
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 3.4e-46 189.9 339 48.1
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.7e-45 187.6 334 42.2
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 3.7e-45 186.4 369 45.3
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.8e-45 186.0 360 40.0
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 6.3e-45 185.7 368 39.1
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 5.4e-44 182.6 350 40.6
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.2e-43 181.4 367 42.8
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.7e-43 180.3 342 41.2
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.3e-42 177.9 342 40.9
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 6.5e-42 175.6 340 39.7
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 2.5e-41 173.7 359 41.5
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 7.2e-41 172.2 291 42.6
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 4.7e-40 169.5 319 40.8
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.8e-39 167.5 362 37.8
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.3e-39 167.2 342 38.9
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 5.2e-39 166.0 358 38.8
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 1.5e-38 164.5 355 38.3
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 2.0e-38 164.1 337 43.9
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 4.4e-38 162.9 356 41.0
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 6.3e-37 159.1 272 44.1
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.4e-36 157.1 360 40.6
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.6e-35 154.5 334 36.5
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 5.0e-34 149.4 329 36.8
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 5.6e-33 146.0 376 37.5
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 7.3e-33 145.6 366 36.1
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.6e-32 144.4 349 35.5
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.6e-32 143.3 344 35.2
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.4e-31 141.4 348 37.1
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 2.3e-31 140.6 349 37.8
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 3.0e-31 140.2 272 40.1
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 6.8e-31 139.0 356 35.7
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.2e-30 138.3 347 35.7
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 3.4e-30 136.7 350 36.3
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 3.7e-29 133.3 353 37.1
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.4e-29 132.5 362 32.3
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.4e-28 131.3 304 40.8
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 1.6e-27 127.9 348 39.4
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.0e-27 127.5 356 34.3
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.1e-25 121.7 343 32.7
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.9e-25 120.9 361 35.5
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 2.5e-25 120.6 277 36.8
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 7.3e-25 119.0 271 36.5
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 7.3e-25 119.0 421 31.6
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 9.5e-25 118.6 297 32.7
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 1.2e-24 118.2 366 32.2
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 2.8e-24 117.1 331 36.3
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 2.8e-24 117.1 348 31.6
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.5e-22 111.3 359 35.7
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.6e-22 110.5 347 30.8
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.4e-22 110.2 344 31.4
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 4.4e-22 109.8 256 35.2
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.9e-21 107.1 348 31.0
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 3.7e-21 106.7 324 34.3
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 8.3e-21 105.5 341 32.3
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 8.3e-21 105.5 191 41.9
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.9e-20 104.4 148 44.6
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.2e-19 101.7 113 56.6
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.7e-19 100.5 106 60.4
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 4.6e-19 99.8 331 30.8
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.7e-18 97.8 106 60.4
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 9.5e-17 92.0 348 29.0
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 3.6e-16 90.1 322 30.1
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 6.2e-16 89.4 205 39.0
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 4.0e-15 86.7 312 29.5
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 2.0e-14 84.3 166 39.2
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.0e-14 84.3 209 36.4
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 5.8e-14 82.8 187 36.9
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 5.8e-14 82.8 100 55.0
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 7.5e-14 82.4 162 40.1
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 7.5e-14 82.4 162 40.1
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 9.8e-14 82.0 162 39.5
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-13 81.6 293 31.7
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 6.4e-13 79.3 216 34.7
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 8.3e-13 79.0 50 84.0
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 8.3e-13 79.0 50 84.0
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 8.3e-13 79.0 160 40.0
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.9e-12 77.8 46 89.1
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 2.4e-12 77.4 100 51.0
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 4.1e-12 76.6 216 32.4
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 4.1e-12 76.6 216 32.4
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 5.4e-12 76.3 44 88.6
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 5.4e-12 76.3 44 88.6
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 5.4e-12 76.3 44 88.6
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 5.4e-12 76.3 44 88.6
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 5.4e-12 76.3 44 88.6
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 7.1e-12 75.9 166 36.1
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.6e-11 74.7 216 33.3
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 1.6e-11 74.7 46 84.8
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 1.6e-11 74.7 46 84.8
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 2.1e-11 74.3 216 32.9
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 3.5e-11 73.6 216 33.3
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 1.0e-10 72.0 54 64.8
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 3.9e-10 70.1 286 28.0
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 1.1e-09 68.6 61 52.5
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 3.6e-08 63.5 268 26.5
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 8.1e-08 62.4 53 49.1
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 1.1e-07 62.0 212 32.1
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 2.0e-06 57.8 216 33.8
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.4e-06 56.6 214 32.2
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 7.6e-06 55.8 242 29.8


User provided reference genes

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