Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.3e-52 209.5 108 100.0
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 7.6e-42 173.7 104 85.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 9.3e-40 166.8 108 79.6
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 8.7e-38 160.2 108 75.0
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 8.5e-33 143.7 106 70.8
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.2e-32 141.7 103 70.9
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.2e-31 139.8 108 69.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.7e-31 138.7 107 66.4
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.7e-31 138.7 103 69.9
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.7e-31 138.7 103 69.9
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 3.6e-31 138.3 108 66.7
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.1e-31 137.5 104 68.3
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 7.9e-31 137.1 104 67.3
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-30 136.7 102 69.6
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.8e-30 136.0 105 66.7
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.8e-30 136.0 104 65.4
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.8e-30 136.0 108 67.6
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 3.0e-30 135.2 105 66.7
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.0e-30 135.2 108 65.7
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 3.0e-30 135.2 103 66.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.9e-30 134.8 102 68.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.1e-30 134.4 103 68.9
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.1e-29 133.3 103 67.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-29 133.3 106 66.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.5e-29 132.9 102 67.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.9e-29 132.5 104 65.4
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.5e-29 132.1 103 66.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 3.3e-29 131.7 104 67.3
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 4.3e-29 131.3 103 66.0
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 9.7e-29 130.2 102 65.7
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.3e-28 129.8 106 63.2
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.3e-28 129.8 101 66.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 1.3e-28 129.8 104 64.4
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.7e-28 129.4 102 65.7
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.7e-28 129.4 107 61.7
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.7e-28 129.4 103 64.1
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.2e-28 129.0 103 65.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.2e-28 129.0 103 65.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-28 129.0 102 65.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.7e-28 128.3 103 64.1
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 4.8e-28 127.9 104 64.4
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 8.2e-28 127.1 108 63.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.1e-27 126.7 102 63.7
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.8e-27 125.9 106 62.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.8e-27 125.9 102 65.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.1e-27 125.2 102 65.7
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 4.1e-27 124.8 103 62.1
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 6.9e-27 124.0 104 62.5
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 6.9e-27 124.0 100 63.0
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 6.9e-27 124.0 101 63.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 9.1e-27 123.6 108 60.2
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.2e-26 123.2 108 62.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.5e-26 122.9 104 60.6
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 4.5e-26 121.3 104 64.4
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 7.7e-26 120.6 107 57.9
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.3e-25 119.8 96 69.8
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.3e-25 119.8 104 63.5
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.2e-25 119.0 102 59.8
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.9e-25 118.6 103 60.2
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.9e-25 118.6 103 62.1
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.9e-25 118.6 97 64.9
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 3.8e-25 118.2 95 66.3
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 5.0e-25 117.9 103 57.3
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 5.0e-25 117.9 94 66.0
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 5.0e-25 117.9 106 58.5
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 6.5e-25 117.5 103 57.3
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 4.2e-24 114.8 97 62.9
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 5.5e-24 114.4 106 58.5
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 7.2e-24 114.0 103 58.3
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-23 112.8 102 60.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.1e-23 112.5 93 65.6
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 4.7e-23 111.3 104 59.6
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 6.1e-23 110.9 95 62.1
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.9e-23 110.5 107 57.0
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 7.9e-23 110.5 105 56.2
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-22 110.2 99 58.6
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.4e-22 109.8 104 56.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.4e-22 109.8 104 56.7
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 3.0e-22 108.6 84 69.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.9e-22 108.2 103 56.3
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.1e-22 107.8 99 58.6
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.0e-21 105.9 103 60.2
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.6e-21 105.5 104 54.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.4e-21 104.8 107 55.1
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.3e-20 103.2 108 55.6
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 4.8e-20 101.3 95 58.9
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.5e-18 96.3 95 53.7
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.5e-18 94.7 82 59.8
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 5.9e-18 94.4 106 52.8
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.0e-17 93.6 83 56.6
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.7e-17 92.8 87 56.3
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.9e-17 92.0 87 56.3
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.1e-16 90.1 89 53.9
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 9.4e-16 87.0 72 58.3
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.7e-15 85.5 86 53.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.7e-15 85.5 86 53.5
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 3.6e-15 85.1 97 50.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 8.0e-15 84.0 93 50.5
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.4e-14 83.2 88 48.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.8e-14 82.8 84 51.2
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.8e-14 82.8 74 56.8
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.9e-14 81.6 88 52.3
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.9e-14 81.6 83 54.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.7e-14 80.9 88 52.3
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-13 80.1 69 60.9
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.0e-13 79.3 70 60.0
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.3e-13 78.6 82 57.3
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 3.3e-13 78.6 60 66.7
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.3e-12 76.6 81 50.6
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.2e-12 75.9 69 59.4
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.2e-12 75.9 72 58.3
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.8e-12 75.5 62 62.9
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.8e-12 75.5 81 49.4
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.8e-12 75.5 81 49.4
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.8e-12 75.5 81 49.4
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 3.7e-12 75.1 68 57.4
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.8e-12 74.7 90 46.7
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.1e-11 73.6 89 42.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.1e-11 73.6 69 55.1
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.4e-11 73.2 81 48.1
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.4e-11 72.4 100 43.0
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.4e-11 72.4 102 42.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 3.1e-11 72.0 76 48.7
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 4.1e-11 71.6 80 51.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 4.1e-11 71.6 80 51.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 4.1e-11 71.6 71 49.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.2e-10 70.1 93 44.1
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.2e-10 70.1 62 54.8
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.2e-10 70.1 92 47.8
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.6e-10 69.7 107 41.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.6e-10 69.7 63 54.0
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.6e-10 69.7 69 50.7
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 2.0e-10 69.3 99 43.4
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.5e-10 68.6 92 48.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.5e-10 68.6 100 39.0
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.0e-09 67.0 80 45.0
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.3e-09 66.6 68 54.4
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-09 66.2 89 43.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-09 66.2 89 43.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.7e-09 66.2 88 45.5
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.8e-09 65.1 68 47.1
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 5.0e-09 64.7 79 43.0
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 5.0e-09 64.7 86 44.2
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.1e-08 63.5 129 35.7
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 1.9e-08 62.8 77 42.9
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.5e-08 62.4 67 52.2
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.2e-08 61.6 70 48.6
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 9.4e-08 60.5 99 39.4
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 9.4e-08 60.5 46 63.0
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-07 60.1 70 51.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.2e-07 60.1 70 51.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.2e-07 60.1 70 51.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.2e-07 60.1 70 51.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.2e-07 60.1 70 51.4
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.6e-07 59.7 96 40.6
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.1e-07 59.3 46 63.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.7e-07 58.2 47 59.6
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 8.0e-07 57.4 87 41.4
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.8e-06 56.2 70 50.0
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.3e-06 55.8 48 58.3
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.3e-06 55.8 85 36.5
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 3.0e-06 55.5 70 48.6
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 3.0e-06 55.5 87 40.2


User provided reference genes

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