Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g013860 Medicago truncatula HOM05D001770 ORTHO05D259916 2.5e-33 144.8 72 100.0
Medtr1g013900 Medicago truncatula HOM05D001770 ORTHO05D259735 2.5e-33 144.8 72 100.0
Medtr1g013940 Medicago truncatula HOM05D001770 ORTHO05D263187 2.5e-33 144.8 72 100.0
Medtr1g013980 Medicago truncatula HOM05D001770 ORTHO05D258149 2.5e-33 144.8 72 100.0
Medtr1g013820 Medicago truncatula HOM05D001770 ORTHO05D001822 6.5e-21 103.6 64 78.1
TPR.G38891 Trifolium pratense HOM05D001770 ORTHO05D001822 1.9e-20 102.1 64 76.6
Psat6g026840 Pisum sativum HOM05D001770 ORTHO05D001822 2.5e-20 101.7 64 76.6
Ca_13070_v3 Cicer arietinum L. HOM05D001770 ORTHO05D001822 1.0e-18 96.3 64 71.9
VMungo0647G0593 Vigna mungo HOM05D001770 ORTHO05D001822 8.2e-16 86.7 64 60.9
Lj5g0014769 Lotus japonicus HOM05D001770 ORTHO05D001822 1.4e-15 85.9 64 60.9
Glyma.17G222700 Glycine max HOM05D001770 ORTHO05D001822 6.9e-15 83.6 63 60.3
Lalb_Chr24g0402001 Lupinus albus HOM05D001770 ORTHO05D001822 2.0e-14 82.0 65 63.1
Glyma.14G102700 Glycine max HOM05D001770 ORTHO05D001822 2.6e-14 81.6 64 57.8
Lj5g0021754 Lotus japonicus HOM05D001770 ORTHO05D001822 5.9e-14 80.5 64 56.2
GSVIVG01035962001 Vitis vinifera HOM05D001770 ORTHO05D001822 1.7e-13 79.0 64 56.2
CSS0011502 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 2.9e-13 78.2 64 60.9
CiPaw.08G006100 Carya illinoinensis HOM05D001770 ORTHO05D001822 5.0e-13 77.4 64 54.7
CSS0018194 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 6.5e-13 77.0 64 59.4
Rhsim07G0164900 Rhododendron simsii HOM05D001770 ORTHO05D001822 8.5e-13 76.6 64 56.2
CiPaw.07G229900 Carya illinoinensis HOM05D001770 ORTHO05D001822 3.2e-12 74.7 64 54.7
Phvul.009G087200 Phaseolus vulgaris HOM05D001770 ORTHO05D001822 3.2e-12 74.7 64 56.2
Rhsim07G0165200 Rhododendron simsii HOM05D001770 ORTHO05D001822 3.2e-12 74.7 64 54.7
RcHm_v2.0_Chr6g0299441 Rosa chinensis HOM05D001770 ORTHO05D001822 3.2e-12 74.7 71 52.1
arahy.Tifrunner.gnm1.ann1.L2Z1RL Arachis hypogaea HOM05D001770 ORTHO05D001822 4.2e-12 74.3 64 53.1
CANSAT11G1441 Cannabis sativa HOM05D001770 ORTHO05D001822 4.2e-12 74.3 66 51.5
QL02p018947 Quercus lobata HOM05D001770 ORTHO05D001822 4.2e-12 74.3 64 56.2
arahy.Tifrunner.gnm1.ann1.96UBDB Arachis hypogaea HOM05D001770 ORTHO05D001822 5.5e-12 73.9 64 53.1
Lalb_Chr22g0361351 Lupinus albus HOM05D001770 ORTHO05D001822 7.2e-12 73.6 65 56.9
THA.LOC104824958 Tarenaya hassleriana HOM05D001770 ORTHO05D001822 7.2e-12 73.6 65 56.9
Migut.A00337 Erythranthe guttata HOM05D001770 ORTHO05D001822 9.4e-12 73.2 64 54.7
Eucgr.J00167 Eucalyptus grandis HOM05D001770 ORTHO05D001822 1.2e-11 72.8 64 56.2
Prupe.1G393400 Prunus persica HOM05D001770 ORTHO05D001822 1.2e-11 72.8 64 56.2
Actinidia14128 Actinidia chinensis HOM05D001770 ORTHO05D001822 1.6e-11 72.4 64 56.2
CsaV3_4G036570 Cucumis sativus L. HOM05D001770 ORTHO05D001822 1.6e-11 72.4 64 54.7
AT5G10870 Arabidopsis thaliana HOM05D001770 ORTHO05D001822 2.1e-11 72.0 66 54.5
Nn2g12357 Nelumbo nucifera HOM05D001770 ORTHO05D001822 2.1e-11 72.0 64 54.7
Oeu030216.3 Olea europaea HOM05D001770 ORTHO05D001822 2.1e-11 72.0 64 56.2
ClCG05G016310 Citrullus lanatus HOM05D001770 ORTHO05D001822 2.7e-11 71.6 64 53.1
Sed0026064 Sechium edule HOM05D001770 ORTHO05D001822 3.6e-11 71.2 65 52.3
TAR383G0970 Trochodendron aralioides HOM05D001770 ORTHO05D001822 3.6e-11 71.2 64 54.7
Cfa013061 Carpinus fangiana HOM05D001770 ORTHO05D001822 4.6e-11 70.9 64 51.6
Hma1.2p1_1284F.1_g272910 Hydrangea macrophylla HOM05D001770 ORTHO05D001822 4.6e-11 70.9 64 54.7
Cc08_g07910 Coffea canephora HOM05D001770 ORTHO05D001822 6.1e-11 70.5 64 54.7
FvH4_2g41100 Fragaria vesca HOM05D001770 ORTHO05D001822 6.1e-11 70.5 71 50.7
FAN15G1991 Fragaria x ananassa HOM05D001770 ORTHO05D001822 6.1e-11 70.5 71 50.7
FAN27G0554 Fragaria x ananassa HOM05D001770 ORTHO05D001822 6.1e-11 70.5 71 50.7
MELO3C016962.2 Cucumis melo HOM05D001770 ORTHO05D001822 7.9e-11 70.1 64 53.1
FAN20G0102 Fragaria x ananassa HOM05D001770 ORTHO05D001822 7.9e-11 70.1 71 50.7
AL6G21440 Arabidopsis lyrata HOM05D001770 ORTHO05D001822 1.4e-10 69.3 66 53.0
Sed0016147 Sechium edule HOM05D001770 ORTHO05D001822 1.8e-10 68.9 64 51.6
TWI34G0464 Tripterygium wilfordii HOM05D001770 ORTHO05D001822 2.3e-10 68.6 64 51.6
Phvul.001G041900 Phaseolus vulgaris HOM05D001770 ORTHO05D001822 3.0e-10 68.2 64 53.1
CANSAT64G0817 Cannabis sativa HOM05D001770 ORTHO05D001822 3.9e-10 67.8 66 47.0
CAN.G61.33 Capsicum annuum HOM05D001770 ORTHO05D001822 3.9e-10 67.8 71 49.3
Dinv11661 Davidia involucrata HOM05D001770 ORTHO05D001822 3.9e-10 67.8 69 50.7
Gohir.D05G061600 Gossypium hirsutum HOM05D001770 ORTHO05D001822 3.9e-10 67.8 65 52.3
PSO339G4521 Papaver somniferum HOM05D001770 ORTHO05D001822 3.9e-10 67.8 66 50.0
PSO384G1543 Papaver somniferum HOM05D001770 ORTHO05D001822 3.9e-10 67.8 66 51.5
Sopen11g009140 Solanum pennellii HOM05D001770 ORTHO05D001822 3.9e-10 67.8 71 49.3
Gorai.009G062700 Gossypium raimondii HOM05D001770 ORTHO05D001822 5.1e-10 67.4 65 50.8
Solyc11g017240.3 Solanum lycopersicum HOM05D001770 ORTHO05D001822 5.1e-10 67.4 71 49.3
Haze_21421 Corylus avellana HOM05D001770 ORTHO05D001822 6.7e-10 67.0 64 48.4
PGR044G2432 Punica granatum HOM05D001770 ORTHO05D001822 6.7e-10 67.0 65 49.2
Sabra18G0021800 Salix brachista HOM05D001770 ORTHO05D001822 6.7e-10 67.0 64 51.6
Aqoxy4G00361 Aquilegia oxysepala HOM05D001770 ORTHO05D001822 8.8e-10 66.6 64 50.0
Glyma.04G061100 Glycine max HOM05D001770 ORTHO05D001822 8.8e-10 66.6 65 55.4
vmacro05127 Vaccinium macrocarpon HOM05D001770 ORTHO05D001822 8.8e-10 66.6 64 51.6
Ca_15776_v3 Cicer arietinum L. HOM05D001770 ORTHO05D001822 1.1e-09 66.2 64 48.4
DCAR_022859 Daucus carota HOM05D001770 ORTHO05D001822 1.1e-09 66.2 64 50.0
Nitab4.5_0006099g0020 Nicotiana tabacum HOM05D001770 ORTHO05D001822 1.5e-09 65.9 65 47.7
C02p04720 Brassica napus HOM05D001770 ORTHO05D001822 2.0e-09 65.5 65 52.3
Nitab4.5_0000159g0240 Nicotiana tabacum HOM05D001770 ORTHO05D001822 2.0e-09 65.5 65 49.2
PGSC0003DMG400009237 Solanum tuberosum HOM05D001770 ORTHO05D001822 2.0e-09 65.5 71 49.3
SGA_v2.0_scaffold22G09915 Striga asiatica HOM05D001770 ORTHO05D001822 2.0e-09 65.5 64 50.0
Carub.0006s0937 Capsella rubella HOM05D001770 ORTHO05D001822 2.5e-09 65.1 66 50.0
SalBow4G0831 Salvia bowleyana HOM05D001770 ORTHO05D001822 2.5e-09 65.1 64 50.0
MD15G1040000 Malus domestica HOM05D001770 ORTHO05D001822 3.3e-09 64.7 71 47.9
QL02p018913 Quercus lobata HOM05D001770 ORTHO05D001822 3.3e-09 64.7 64 50.0
Sp6g32600 Schrenkiella parvula HOM05D001770 ORTHO05D001822 3.3e-09 64.7 64 48.4
Atru.chr7.2545 Acer truncatum HOM05D001770 ORTHO05D001822 4.3e-09 64.3 63 47.6
Duzib168G0941 Durio zibethinus HOM05D001770 ORTHO05D001822 4.3e-09 64.3 64 51.6
Manes.16G129300 Manihot esculenta HOM05D001770 ORTHO05D001822 4.3e-09 64.3 64 50.0
Medtr3g106000 Medicago truncatula HOM05D001770 ORTHO05D001822 4.3e-09 64.3 64 46.9
BolC2t06431H Brassica oleracea HOM05D001770 ORTHO05D001822 5.7e-09 63.9 65 50.8
CARHR202410 Cardamine hirsuta HOM05D001770 ORTHO05D001822 5.7e-09 63.9 65 49.2
BraA02t05057Z Brassica rapa HOM05D001770 ORTHO05D001822 7.4e-09 63.5 64 48.4
CDE05G2611 Ceratophyllum demersum HOM05D001770 ORTHO05D001822 7.4e-09 63.5 64 46.9
A02p00720 Brassica napus HOM05D001770 ORTHO05D001822 9.7e-09 63.2 65 49.2
Thhalv10014419m.g Eutrema salsugineum HOM05D001770 ORTHO05D001822 1.7e-08 62.4 64 51.6
Ciclev10009191m.g Citrus clementina HOM05D001770 ORTHO05D001822 2.2e-08 62.0 63 41.3
Peaxi162Scf00495g00010 Petunia axillaris HOM05D001770 ORTHO05D001822 2.2e-08 62.0 64 48.4
AUR62023047 Chenopodium quinoa HOM05D001770 ORTHO05D001822 2.8e-08 61.6 64 48.4
MD08G1057400 Malus domestica HOM05D001770 ORTHO05D001822 2.8e-08 61.6 71 46.5
Aa31LG3G16240 Aethionema arabicum HOM05D001770 ORTHO05D001822 3.7e-08 61.2 64 48.4
COL.COLO4_18946 Corchorus olitorius HOM05D001770 ORTHO05D001822 3.7e-08 61.2 64 50.0
Thecc.09G016100 Theobroma cacao HOM05D001770 ORTHO05D001822 4.8e-08 60.8 64 48.4
MBI15_g19323_MAGBIO Magnolia biondii HOM05D001770 ORTHO05D001822 6.3e-08 60.5 63 42.9
Potri.018G019250 Populus trichocarpa HOM05D001770 ORTHO05D001822 6.3e-08 60.5 64 50.0
QL02p018931 Quercus lobata HOM05D001770 ORTHO05D001822 8.2e-08 60.1 64 50.0
AUR62009366 Chenopodium quinoa HOM05D001770 ORTHO05D001822 1.1e-07 59.7 64 46.9
Gohir.D06G103700 Gossypium hirsutum HOM05D001770 ORTHO05D001822 1.1e-07 59.7 64 50.0
Gorai.010G118700 Gossypium raimondii HOM05D001770 ORTHO05D001822 1.1e-07 59.7 64 50.0
TPR.G1851 Trifolium pratense HOM05D001770 ORTHO05D001822 2.4e-07 58.5 64 48.4
HPP92_004686 Vanilla planifolia HOM05D001770 ORTHO05D001822 2.4e-07 58.5 64 45.3
HPP92_004691 Vanilla planifolia HOM05D001770 ORTHO05D001822 2.4e-07 58.5 64 45.3
Gohir.A06G101700 Gossypium hirsutum HOM05D001770 ORTHO05D001822 4.1e-07 57.8 64 48.4
Zm00001eb234080 Zea mays HOM05D001770 ORTHO05D001822 4.1e-07 57.8 65 44.6
HanXRQChr09g0264081 Helianthus annuus HOM05D001770 ORTHO05D001822 9.1e-07 56.6 65 44.6
MBI14_g09681_MAGBIO Magnolia biondii HOM05D001770 ORTHO05D001822 9.1e-07 56.6 64 46.9
HPP92_017170 Vanilla planifolia HOM05D001770 ORTHO05D001822 1.2e-06 56.2 64 46.9
EL10Ac2g04113 Beta vulgaris HOM05D001770 ORTHO05D001822 1.5e-06 55.8 65 43.1
Os02g0180500 Oryza sativa ssp. japonica HOM05D001770 ORTHO05D001822 1.5e-06 55.8 70 40.0
Os08g0441600 Oryza sativa ssp. japonica HOM05D001770 ORTHO05D001822 1.5e-06 55.8 70 40.0
CSS0024860 Camellia sinensis var. sinensis HOM05D001770 ORTHO05D001822 2.0e-06 55.5 65 40.0
Pp3c13_17100 Physcomitrium patens HOM05D001770 ORTHO05D001822 2.0e-06 55.5 64 42.2
Sed0013447 Sechium edule HOM05D001770 ORTHO05D001822 2.6e-06 55.1 65 38.5
Hund03453 Selenicereus undatus HOM05D001770 ORTHO05D001822 2.6e-06 55.1 64 37.5
ATR0739G044 Amborella trichopoda HOM05D001770 ORTHO05D001822 3.4e-06 54.7 64 40.6
CsaV3_3G041000 Cucumis sativus L. HOM05D001770 ORTHO05D001822 3.4e-06 54.7 64 37.5
FAN22G2320 Fragaria x ananassa HOM05D001770 ORTHO05D005831 3.4e-06 54.7 65 41.5
SalBow1G0861 Salvia bowleyana HOM05D001770 ORTHO05D001822 3.4e-06 54.7 65 36.9
SalBow1G4967 Salvia bowleyana HOM05D001770 ORTHO05D001822 3.4e-06 54.7 65 36.9
CDE07G0629 Ceratophyllum demersum HOM05D001770 ORTHO05D001822 4.5e-06 54.3 65 40.0
Pp3c3_23850 Physcomitrium patens HOM05D001770 ORTHO05D001822 4.5e-06 54.3 64 40.6
HPP92_018455 Vanilla planifolia HOM05D001770 ORTHO05D001822 5.9e-06 53.9 65 38.5


User provided reference genes

Program Settings