Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 3.4e-80 301.6 152 100.0
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 3.3e-75 285.0 152 94.1
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 9.0e-65 250.4 152 81.6
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 2.0e-64 249.2 170 74.7
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 2.0e-64 249.2 152 80.9
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 2.2e-63 245.7 152 80.3
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 4.6e-61 238.0 152 76.3
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 5.1e-60 234.6 152 77.0
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 4.8e-58 228.0 144 77.1
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 5.0e-55 218.0 147 73.5
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 4.2e-54 214.9 150 72.0
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 1.5e-51 206.5 151 69.5
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 1.5e-51 206.5 149 71.1
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 2.6e-51 205.7 147 70.7
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 4.4e-51 204.9 149 68.5
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 7.4e-51 204.1 150 66.7
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 2.8e-50 202.2 151 68.2
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 6.3e-50 201.1 147 68.7
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 1.1e-49 200.3 152 67.8
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 1.4e-49 199.9 149 69.1
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 2.4e-49 199.1 149 67.1
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 5.3e-49 198.0 149 65.1
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 1.2e-48 196.8 126 75.4
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 1.5e-48 196.4 148 67.6
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 2.6e-48 195.7 146 67.1
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 2.6e-48 195.7 153 66.7
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 3.4e-48 195.3 149 63.8
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 4.5e-48 194.9 147 67.3
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 3.8e-47 191.8 150 66.7
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 8.5e-47 190.7 151 63.6
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 1.9e-46 189.5 151 62.3
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 2.5e-46 189.1 125 74.4
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 9.4e-46 187.2 143 65.0
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 1.2e-45 186.8 150 60.7
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 1.6e-45 186.4 150 63.3
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 2.1e-45 186.0 148 64.9
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 2.7e-45 185.7 151 61.6
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 3.6e-45 185.3 159 59.7
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 7.9e-45 184.1 151 60.3
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 1.0e-44 183.7 149 59.1
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 1.0e-44 183.7 147 61.2
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 2.3e-44 182.6 150 60.7
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 3.0e-44 182.2 148 63.5
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 3.0e-44 182.2 147 63.9
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 5.2e-44 181.4 148 59.5
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 6.7e-44 181.0 126 72.2
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 6.7e-44 181.0 150 56.7
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 8.8e-44 180.6 152 56.6
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 8.8e-44 180.6 151 62.9
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 8.8e-44 180.6 151 60.3
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 8.8e-44 180.6 151 60.9
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 1.1e-43 180.3 150 58.7
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 2.0e-43 179.5 149 61.1
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 2.0e-43 179.5 150 56.7
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 2.6e-43 179.1 150 56.7
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 2.6e-43 179.1 150 56.0
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 3.3e-43 178.7 144 63.2
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 3.3e-43 178.7 151 59.6
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 7.4e-43 177.6 151 59.6
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 1.3e-42 176.8 150 59.3
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 1.7e-42 176.4 144 62.5
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 2.2e-42 176.0 146 61.6
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 2.2e-42 176.0 148 58.1
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 3.7e-42 175.3 148 59.5
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 3.7e-42 175.3 152 55.3
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 6.3e-42 174.5 145 57.9
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 1.1e-41 173.7 150 61.3
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 1.4e-41 173.3 151 55.6
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 1.4e-41 173.3 151 55.6
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 1.4e-41 173.3 151 55.6
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 5.3e-41 171.4 172 54.1
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 7.0e-41 171.0 144 60.4
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 7.0e-41 171.0 150 55.3
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 7.0e-41 171.0 125 68.0
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 9.1e-41 170.6 125 68.0
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 1.2e-40 170.2 150 55.3
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 3.5e-40 168.7 146 56.8
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 3.5e-40 168.7 146 56.8
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 4.5e-40 168.3 127 66.9
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 2.9e-39 165.6 178 52.8
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 8.5e-39 164.1 172 52.3
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 1.1e-38 163.7 121 65.3
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 2.5e-38 162.5 127 63.0
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 2.5e-38 162.5 152 53.9
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 5.5e-38 161.4 119 66.4
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 4.7e-37 158.3 150 55.3
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 6.7e-36 154.5 118 66.9
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 1.2e-35 153.7 131 60.3
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 3.3e-35 152.1 115 67.0
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 3.7e-34 148.7 123 59.3
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 5.3e-33 144.8 113 63.7
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 9.1e-33 144.1 112 64.3
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 8.5e-31 137.5 111 60.4
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 2.7e-29 132.5 114 54.4
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 2.7e-29 132.5 101 63.4
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 8.0e-29 131.0 151 49.7
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 5.7e-27 124.8 150 47.3
RcHm_v2.0_Chr7g0186961 Rosa chinensis HOM05D006886 ORTHO05D008494 2.2e-26 122.9 90 65.6
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 1.7e-23 113.2 145 40.7
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 2.2e-23 112.8 149 39.6
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 3.6e-21 105.5 127 40.2
Ca_06796_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 6.1e-21 104.8 75 74.7
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 6.1e-21 104.8 80 63.8
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 2.3e-20 102.8 88 61.4
GSVIVG01036003001 Vitis vinifera HOM05D006886 ORTHO05D008494 1.5e-19 100.1 71 67.6
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 2.0e-19 99.8 147 38.1
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 2.6e-19 99.4 120 40.8
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 4.4e-19 98.6 130 37.7
Gohir.D07G037233 Gossypium hirsutum HOM05D006886 ORTHO05D008494 5.7e-19 98.2 71 69.0
MELO3C032323.2 Cucumis melo HOM05D006886 ORTHO05D008494 2.2e-18 96.3 71 64.8
MD05G1059000 Malus domestica HOM05D006886 ORTHO05D008494 2.8e-18 95.9 70 67.1
Ca_13745_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 4.1e-17 92.0 55 83.6
Hma1.2p1_0355F.1_g133940 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 4.1e-17 92.0 69 60.9
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 2.3e-15 86.3 82 52.4
MELO3C032324.2 Cucumis melo HOM05D006886 ORTHO05D008494 1.9e-14 83.2 98 44.9


User provided reference genes

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