Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 3.4e-21 104.4 65 100.0
Psat6g024640 Pisum sativum HOM05D007824 ORTHO05D009875 1.2e-13 79.3 43 88.4
TPR.G38894 Trifolium pratense HOM05D007824 ORTHO05D009875 2.9e-12 74.7 43 83.7
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 9.3e-11 69.7 46 73.9
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 1.0e-09 66.2 47 70.2
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 8.7e-09 63.2 66 69.7
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 1.9e-08 62.0 47 63.8
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 3.3e-08 61.2 47 66.0
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 4.3e-08 60.8 42 66.7
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 4.3e-08 60.8 47 61.7
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.7e-08 60.5 48 62.5
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 5.7e-08 60.5 48 62.5
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 5.7e-08 60.5 47 59.6
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 5.7e-08 60.5 47 61.7
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 5.7e-08 60.5 47 61.7
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 5.7e-08 60.5 47 61.7
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 7.4e-08 60.1 69 55.1
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 7.4e-08 60.1 69 55.1
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 7.4e-08 60.1 48 66.7
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 7.4e-08 60.1 47 63.8
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 9.7e-08 59.7 47 57.4
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 9.7e-08 59.7 47 55.3
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 9.7e-08 59.7 39 74.4
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.3e-07 59.3 47 66.0
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.3e-07 59.3 47 55.3
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.6e-07 58.9 40 72.5
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.6e-07 58.9 48 62.5
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 2.2e-07 58.5 48 62.5
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 3.7e-07 57.8 40 67.5
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 3.7e-07 57.8 47 63.8
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 4.8e-07 57.4 48 60.4
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 4.8e-07 57.4 46 60.9
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.8e-06 55.5 45 64.4
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 1.8e-06 55.5 48 62.5
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 4.1e-06 54.3 48 56.2
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 5.3e-06 53.9 39 66.7
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 5.3e-06 53.9 40 65.0
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 5.3e-06 53.9 48 56.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 6.9e-06 53.5 38 68.4
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 6.9e-06 53.5 38 68.4
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 6.9e-06 53.5 50 56.0
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 9.0e-06 53.1 40 60.0
Phvul.001G043300 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 9.0e-06 53.1 45 60.0
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 9.0e-06 53.1 38 65.8


User provided reference genes

Program Settings