Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g012870 Medicago truncatula HOM05D000590 ORTHO05D009145 0.0e+00 2625.9 1311 100.0
Ca_13040_v3 Cicer arietinum L. HOM05D000590 ORTHO05D009145 0.0e+00 1696.8 1296 71.3
TPR.G38859 Trifolium pratense HOM05D000590 ORTHO05D009145 0.0e+00 1672.1 1252 72.0
Ca_30354_v3 Cicer arietinum L. HOM05D000590 ORTHO05D009145 0.0e+00 1649.8 1254 71.5
Glyma.17G215200 Glycine max HOM05D000590 ORTHO05D009145 0.0e+00 1231.1 1379 54.0
Glyma.14G112700 Glycine max HOM05D000590 ORTHO05D009145 0.0e+00 1221.5 1354 53.9
Phvul.001G047700 Phaseolus vulgaris HOM05D000590 ORTHO05D009145 0.0e+00 1118.6 1349 49.7
VMungo0647G0757 Vigna mungo HOM05D000590 ORTHO05D009145 9.9e-261 904.4 1652 39.7
Lj5g0001427 Lotus japonicus HOM05D000590 ORTHO05D009145 4.8e-255 885.6 1181 48.1
QL02p020481 Quercus lobata HOM05D000590 ORTHO05D009145 9.3e-134 482.6 1404 32.6
Cfa013108 Carpinus fangiana HOM05D000590 ORTHO05D009145 3.5e-133 480.7 1384 33.3
Haze_21466 Corylus avellana HOM05D000590 ORTHO05D009145 2.4e-129 468.0 1404 32.3
Prupe.1G485700 Prunus persica HOM05D000590 ORTHO05D009145 8.7e-124 449.5 1404 31.5
Potri.018G023000 Populus trichocarpa HOM05D000590 ORTHO05D009145 1.1e-121 442.6 1387 30.9
CiPaw.07G226700 Carya illinoinensis HOM05D000590 ORTHO05D009145 2.2e-119 434.9 1408 31.2
Atru.chr7.2494 Acer truncatum HOM05D000590 ORTHO05D009145 3.9e-116 424.1 1282 31.6
Manes.03G012400 Manihot esculenta HOM05D000590 ORTHO05D009145 2.6e-115 421.4 1383 30.0
Sabra18G0025500 Salix brachista HOM05D000590 ORTHO05D009145 2.6e-115 421.4 1393 30.4
Thecc.09G020000 Theobroma cacao HOM05D000590 ORTHO05D009145 1.2e-112 412.5 1276 31.5
MD15G1130200 Malus domestica HOM05D000590 ORTHO05D009145 4.5e-112 410.6 1404 31.3
FAN24G2365 Fragaria x ananassa HOM05D000590 ORTHO05D009145 1.3e-106 392.5 1353 30.4
FvH4_2g28350 Fragaria vesca HOM05D000590 ORTHO05D009145 1.7e-106 392.1 1354 30.5
Dinv18158 Davidia involucrata HOM05D000590 ORTHO05D009145 1.6e-104 385.6 1423 30.5
Duzib168G1510 Durio zibethinus HOM05D000590 ORTHO05D009145 3.8e-103 380.9 1387 29.5
TAR636G2375 Trochodendron aralioides HOM05D000590 ORTHO05D009145 7.2e-102 376.7 1377 29.6
RcHm_v2.0_Chr6g0297291 Rosa chinensis HOM05D000590 ORTHO05D009145 1.4e-100 372.5 1369 29.9
FAN27G0748 Fragaria x ananassa HOM05D000590 ORTHO05D009145 5.2e-100 370.5 1353 30.6
FAN20G2931 Fragaria x ananassa HOM05D000590 ORTHO05D009145 1.2e-99 369.4 1355 29.5
Dinv18162 Davidia involucrata HOM05D000590 ORTHO05D009145 3.7e-98 364.4 1383 30.2
arahy.Tifrunner.gnm1.ann1.P756VC Arachis hypogaea HOM05D000590 ORTHO05D009145 4.7e-93 347.4 492 44.3
arahy.Tifrunner.gnm1.ann1.Y6F8M2 Arachis hypogaea HOM05D000590 ORTHO05D009145 5.2e-92 344.0 379 50.9
TWI32G0726 Tripterygium wilfordii HOM05D000590 ORTHO05D009145 3.2e-86 324.7 1393 28.1
CSS0004481 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D009145 3.3e-78 298.1 1419 27.5
Nn8g39696 Nelumbo nucifera HOM05D000590 ORTHO05D009145 8.0e-77 293.5 1418 26.4
vmacro11208 Vaccinium macrocarpon HOM05D000590 ORTHO05D009145 3.0e-76 291.6 1397 28.7
CANSAT25G0126 Cannabis sativa HOM05D000590 ORTHO05D009145 5.4e-73 280.8 1368 27.2
vmacro21896 Vaccinium macrocarpon HOM05D000590 ORTHO05D009145 1.6e-69 269.2 1332 27.6
Rhsim02G0205200 Rhododendron simsii HOM05D000590 ORTHO05D009145 2.8e-61 241.9 1323 27.4
Ciclev10010345m.g Citrus clementina HOM05D000590 ORTHO05D009145 1.7e-58 232.6 647 31.5
GSVIVG01035925001 Vitis vinifera HOM05D000590 ORTHO05D009145 4.6e-56 224.6 693 30.4
Lj5g0010657 Lotus japonicus HOM05D000590 ORTHO05D009145 1.9e-54 219.2 173 66.5
Actinidia22318 Actinidia chinensis HOM05D000590 ORTHO05D009145 1.5e-51 209.5 1226 27.7
Gorai.001G035300 Gossypium raimondii HOM05D000590 ORTHO05D009145 3.4e-51 208.4 1121 26.6
Oeu010890.3 Olea europaea HOM05D000590 ORTHO05D009145 1.4e-49 203.0 1234 25.4
Aqoxy7G03545 Aquilegia oxysepala HOM05D000590 ORTHO05D009145 1.9e-49 202.6 1314 25.3
COL.COLO4_18904 Corchorus olitorius HOM05D000590 ORTHO05D009145 4.6e-48 198.0 645 29.0
GSVIVG01035924001 Vitis vinifera HOM05D000590 ORTHO05D009145 8.1e-45 187.2 574 31.0
THA.LOC104815012 Tarenaya hassleriana HOM05D000590 ORTHO05D009145 1.8e-44 186.0 1363 24.6
Nitab4.5_0005958g0030 Nicotiana tabacum HOM05D000590 ORTHO05D009145 9.9e-43 180.3 1283 23.9
EL10Ac2g04159 Beta vulgaris HOM05D000590 ORTHO05D009145 1.3e-42 179.9 1350 25.0
Nitab4.5_0002992g0010 Nicotiana tabacum HOM05D028555 ORTHO05D009145 1.3e-42 179.9 1308 25.6
Cc08_g00250 Coffea canephora HOM05D000590 ORTHO05D009145 3.8e-42 178.3 1405 24.1
Actinidia13216 Actinidia chinensis HOM05D000590 ORTHO05D009145 3.5e-40 171.8 272 41.2
Gohir.D07G033800 Gossypium hirsutum HOM05D000590 ORTHO05D009145 1.7e-39 169.5 696 29.2
AUR62031566 Chenopodium quinoa HOM05D000590 ORTHO05D009145 1.1e-38 166.8 1328 24.7
HanXRQChr01g0030621 Helianthus annuus HOM05D000590 ORTHO05D009145 1.4e-36 159.8 1167 24.9
COL.COLO4_18905 Corchorus olitorius HOM05D000590 ORTHO05D009145 2.4e-36 159.1 515 30.7
ECA248G0426 Erigeron canadensis HOM05D000590 ORTHO05D009145 9.0e-36 157.1 1223 23.7
Hund04451 Selenicereus undatus HOM05D000590 ORTHO05D009145 1.5e-35 156.4 1226 24.6
AUR62012442 Chenopodium quinoa HOM05D000590 ORTHO05D009145 3.4e-35 155.2 1310 24.7
Ah.10g035720 Amaranthus hybridus HOM05D000590 ORTHO05D009145 1.3e-34 153.3 1308 23.3
Gohir.A07G030000 Gossypium hirsutum HOM05D000590 ORTHO05D009145 9.3e-33 147.1 396 34.6
Actinidia13215 Actinidia chinensis HOM05D000590 ORTHO05D009145 2.7e-32 145.6 780 28.7
Lj7A728T60 Lonicera japonica HOM05D000590 ORTHO05D009145 4.6e-32 144.8 189 45.0
ATR0767G168 Amborella trichopoda HOM05D000590 ORTHO05D009145 1.0e-31 143.7 1379 22.5
Lsat_1_v5_gn_1_43780 Lactuca sativa HOM05D000590 ORTHO05D009145 3.1e-28 132.1 294 34.7
Sc06g0000480 Simmondsia chinensis HOM05D000590 ORTHO05D009145 4.2e-25 121.7 81 67.9
SGA_v2.0_scaffold64G21984 Striga asiatica HOM05D000590 ORTHO05D009145 9.3e-25 120.6 1198 23.1
SalBow4G1906 Salvia bowleyana HOM05D000590 ORTHO05D009145 2.3e-23 115.9 1320 23.1
SEGI_06897 Sequoiadendron giganteum HOM05D000590 ORTHO05D009145 1.0e-18 100.5 110 43.6
Mapoly0002s0198 Marchantia polymorpha HOM05D000590 ORTHO05D009145 1.5e-14 86.7 145 33.8
Pp3c1_28750 Physcomitrium patens HOM05D000590 ORTHO05D009145 1.9e-14 86.3 94 43.6
Pp3c14_19990 Physcomitrium patens HOM05D000590 ORTHO05D009145 5.7e-14 84.7 99 40.4
Medtr1g012910 Medicago truncatula HOM05D000590 ORTHO05D009145 1.3e-13 83.6 83 59.0
Pp3c2_10000 Physcomitrium patens HOM05D000590 ORTHO05D009145 1.6e-13 83.2 176 33.5
Sopen08g011870 Solanum pennellii HOM05D000590 ORTHO05D009145 6.3e-13 81.3 110 45.5
Zm00001eb104540 Zea mays HOM05D000590 ORTHO05D009145 1.5e-11 76.6 136 35.3
HPP92_000484 Vanilla planifolia HOM05D000590 ORTHO05D009145 5.9e-11 74.7 68 47.1
Sc06g0000460 Simmondsia chinensis HOM05D000590 ORTHO05D009145 6.5e-10 71.2 372 25.0
Ciclev10010421m.g Citrus clementina HOM05D000590 ORTHO05D009145 3.9e-07 62.0 169 31.4


User provided reference genes

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