Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g012620 Medicago truncatula HOM05D006421 ORTHO05D008268 3.3e-256 888.6 756 100.0
Psat6g029040 Pisum sativum HOM05D006421 ORTHO05D008268 4.5e-181 639.0 775 79.2
TPR.G15679 Trifolium pratense HOM05D006421 ORTHO05D008268 6.9e-174 615.1 776 78.5
Ca_13033_v3 Cicer arietinum L. HOM05D006421 ORTHO05D008268 4.0e-129 466.5 777 64.7
Lj5g0021919 Lotus japonicus HOM05D006421 ORTHO05D008268 8.1e-114 415.6 773 67.5
Phvul.001G050600 Phaseolus vulgaris HOM05D006421 ORTHO05D008268 1.6e-101 374.8 776 63.7
arahy.Tifrunner.gnm1.ann1.1F1BFK Arachis hypogaea HOM05D006421 ORTHO05D008268 6.6e-100 369.4 791 61.2
VMungo0647G1945 Vigna mungo HOM05D006421 ORTHO05D008268 1.8e-97 361.3 777 64.1
arahy.Tifrunner.gnm1.ann1.658XMK Arachis hypogaea HOM05D006421 ORTHO05D008268 1.1e-91 342.0 791 59.0
FAN27G1287 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.7e-87 328.2 776 54.3
Gorai.001G034500 Gossypium raimondii HOM05D006421 ORTHO05D008268 3.9e-84 317.0 780 51.9
FAN24G1512 Fragaria x ananassa HOM05D006421 ORTHO05D008268 3.7e-82 310.5 784 54.8
Gohir.A07G028900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 4.8e-82 310.1 772 54.1
FAN20G2434 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.4e-81 308.5 781 49.4
FvH4_2g28941 Fragaria vesca HOM05D006421 ORTHO05D008268 1.9e-78 298.1 784 56.2
Duzib187G1366 Durio zibethinus HOM05D006421 ORTHO05D008268 3.2e-78 297.4 786 56.5
Eucgr.C01728 Eucalyptus grandis HOM05D006421 ORTHO05D008268 3.2e-78 297.4 787 49.4
FAN15G0163 Fragaria x ananassa HOM05D006421 ORTHO05D008268 9.3e-78 295.8 776 50.9
Gohir.D07G032900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 6.0e-77 293.1 777 53.2
Duzib168G2139 Durio zibethinus HOM05D006421 ORTHO05D008268 3.9e-76 290.4 784 55.7
Actinidia15670 Actinidia chinensis HOM05D006421 ORTHO05D008268 5.7e-75 286.6 770 45.2
TWI34G1016 Tripterygium wilfordii HOM05D006421 ORTHO05D008268 4.1e-73 280.4 778 52.3
EL10Ac2g04201 Beta vulgaris HOM05D006421 ORTHO05D008268 9.3e-70 269.2 791 52.1
Manes.16G122900 Manihot esculenta HOM05D006421 ORTHO05D008268 4.6e-69 266.9 780 51.2
CiPaw.07G224100 Carya illinoinensis HOM05D006421 ORTHO05D008268 2.2e-66 258.1 781 49.4
Cfa013134 Carpinus fangiana HOM05D006421 ORTHO05D008268 4.5e-64 250.4 784 56.1
Hund04507 Selenicereus undatus HOM05D006421 ORTHO05D008268 2.2e-63 248.1 741 51.3
Haze_21503 Corylus avellana HOM05D006421 ORTHO05D008268 6.5e-63 246.5 786 47.1
Thhalv10024464m.g Eutrema salsugineum HOM05D006421 ORTHO05D008268 1.4e-62 245.4 772 53.5
Hma1.2p1_0243F.1_g100900 Hydrangea macrophylla HOM05D006421 ORTHO05D008268 2.5e-62 244.6 728 54.4
RcHm_v2.0_Chr6g0297771 Rosa chinensis HOM05D006421 ORTHO05D008268 2.5e-62 244.6 775 52.3
Sopen08g011590 Solanum pennellii HOM05D006421 ORTHO05D008268 2.5e-62 244.6 727 47.0
Lalb_Chr24g0402151 Lupinus albus HOM05D006421 ORTHO05D008268 5.5e-62 243.4 771 52.1
Dinv08633 Davidia involucrata HOM05D006421 ORTHO05D008268 7.2e-62 243.0 728 54.1
AT4G32190 Arabidopsis thaliana HOM05D006421 ORTHO05D008268 1.2e-61 242.3 777 48.5
GSVIVG01035871001 Vitis vinifera HOM05D006421 ORTHO05D008268 2.7e-61 241.1 774 53.7
DCAR_001538 Daucus carota HOM05D006421 ORTHO05D008268 2.3e-60 238.0 769 47.2
Migut.A00033 Erythranthe guttata HOM05D006421 ORTHO05D008268 2.3e-60 238.0 512 48.6
Potri.006G255800 Populus trichocarpa HOM05D006421 ORTHO05D008268 3.9e-60 237.3 760 53.6
Oeu053117.1 Olea europaea HOM05D006421 ORTHO05D008268 8.8e-60 236.1 500 50.0
Nitab4.5_0002408g0020 Nicotiana tabacum HOM05D006421 ORTHO05D008268 1.1e-59 235.7 768 55.1
Solyc08g022030.3 Solanum lycopersicum HOM05D006421 ORTHO05D008268 2.0e-59 235.0 727 46.1
Thecc.09G023300 Theobroma cacao HOM05D006421 ORTHO05D008268 2.5e-59 234.6 512 49.8
COL.COLO4_18870 Corchorus olitorius HOM05D006421 ORTHO05D008268 4.3e-59 233.8 784 57.7
A01p06150 Brassica napus HOM05D006421 ORTHO05D008268 5.7e-59 233.4 451 52.3
BcaNung03144 Brassica carinata HOM05D006421 ORTHO05D008268 4.8e-58 230.3 752 54.8
AUR62031532 Chenopodium quinoa HOM05D006421 ORTHO05D008268 4.8e-58 230.3 798 40.0
Sp7g29980 Schrenkiella parvula HOM05D006421 ORTHO05D008268 5.3e-57 226.9 762 55.4
Rhsim07G0159500 Rhododendron simsii HOM05D006421 ORTHO05D008268 2.6e-56 224.6 509 47.7
C01p06780 Brassica napus HOM05D006421 ORTHO05D008268 4.5e-56 223.8 475 48.2
BolC1t00672H Brassica oleracea HOM05D006421 ORTHO05D008268 4.5e-56 223.8 475 48.2
PGSC0003DMG400004306 Solanum tuberosum HOM05D006421 ORTHO05D008268 4.5e-56 223.8 727 52.8
CAN.G117.5 Capsicum annuum HOM05D006421 ORTHO05D008268 2.9e-55 221.1 727 51.0
Prupe.1G482200 Prunus persica HOM05D006421 ORTHO05D008268 5.0e-55 220.3 780 45.6
MD15G1126300 Malus domestica HOM05D006421 ORTHO05D008268 1.4e-52 212.2 784 46.9
QL02p021457 Quercus lobata HOM05D006421 ORTHO05D008268 5.1e-52 210.3 776 53.9
BcaC09g52004 Brassica carinata HOM05D006421 ORTHO05D008268 1.1e-51 209.1 466 48.3
SalBow4G3177 Salvia bowleyana HOM05D006421 ORTHO05D008268 2.0e-51 208.4 730 52.9
Nitab4.5_0002042g0070 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.8e-50 204.5 768 53.3
Cc08_g00500 Coffea canephora HOM05D006421 ORTHO05D008268 4.8e-50 203.8 780 49.2
vmacro05173 Vaccinium macrocarpon HOM05D006421 ORTHO05D008268 9.1e-49 199.5 510 49.4
AL7G19640 Arabidopsis lyrata HOM05D006421 ORTHO05D008268 3.5e-48 197.6 785 46.1
C02p24100 Brassica napus HOM05D006421 ORTHO05D008268 3.5e-48 197.6 440 50.5
CARHR240120 Cardamine hirsuta HOM05D006421 ORTHO05D008268 7.7e-48 196.4 463 45.6
Sabra06G0200100 Salix brachista HOM05D006421 ORTHO05D008268 5.5e-46 190.3 760 51.8
TAR625G1222 Trochodendron aralioides HOM05D006421 ORTHO05D008268 2.1e-45 188.3 789 54.0
CANSAT35G0532 Cannabis sativa HOM05D006421 ORTHO05D008268 1.8e-44 185.3 769 50.6
BcaC03g14918 Brassica carinata HOM05D006421 ORTHO05D008268 4.0e-44 184.1 409 49.4
THA.LOC104818618 Tarenaya hassleriana HOM05D006421 ORTHO05D008268 6.7e-44 183.3 783 47.8
Glyma.17G211900 Glycine max HOM05D006421 ORTHO05D008268 2.0e-43 181.8 779 55.5
MSTRG.11610 Avicennia marina HOM05D006421 ORTHO05D008268 5.7e-43 180.3 776 50.1
Lj8P705T28 Lonicera japonica HOM05D006421 ORTHO05D008268 9.7e-43 179.5 729 41.7
Carub.0007s0836 Capsella rubella HOM05D006421 ORTHO05D008268 2.2e-42 178.3 784 46.6
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 3.1e-41 174.5 723 47.6
TAR636G3563 Trochodendron aralioides HOM05D006421 ORTHO05D008268 4.1e-41 174.1 488 49.6
Oeu033132.1 Olea europaea HOM05D006421 ORTHO05D008268 8.5e-39 166.4 732 52.6
Glyma.14G115951 Glycine max HOM05D006421 ORTHO05D008268 1.5e-38 165.6 211 52.1
Nn8g39522 Nelumbo nucifera HOM05D006421 ORTHO05D008268 3.2e-38 164.5 772 48.8
Peaxi162Scf01131g00117 Petunia axillaris HOM05D006421 ORTHO05D008268 5.5e-38 163.7 711 55.4
Cpa.g.sc217.10 Carica papaya HOM05D006421 ORTHO05D008268 4.7e-37 160.6 767 54.6
Ciclev10007642m.g Citrus clementina HOM05D006421 ORTHO05D008268 5.2e-36 157.1 508 43.5
HanXRQChr16g0510771 Helianthus annuus HOM05D006421 ORTHO05D008268 2.0e-35 155.2 717 46.7
AUR62012410 Chenopodium quinoa HOM05D006421 ORTHO05D008268 5.7e-35 153.7 776 41.0
Actinidia14601 Actinidia chinensis HOM05D006421 ORTHO05D008268 7.5e-35 153.3 229 46.3
PSO170G2190 Papaver somniferum HOM05D006421 ORTHO05D008268 2.8e-34 151.4 521 39.5
Sc09g0008160 Simmondsia chinensis HOM05D006421 ORTHO05D008268 2.4e-33 148.3 509 43.2
PGR031G1896 Punica granatum HOM05D006421 ORTHO05D008268 2.0e-32 145.2 777 47.1
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 4.5e-32 144.1 716 49.6
MELO3C003706.2 Cucumis melo HOM05D006421 ORTHO05D008268 1.7e-31 142.1 512 38.1
Sed0003255 Sechium edule HOM05D006421 ORTHO05D008268 2.7e-29 134.8 775 44.8
Glyma.14G115900 Glycine max HOM05D006421 ORTHO05D008268 1.8e-28 132.1 150 59.3
BraA10t43273Z Brassica rapa HOM05D006421 ORTHO05D008268 2.4e-25 121.7 178 43.3
CSS0048874 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 5.4e-25 120.6 381 46.5
CSS0036831 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 5.0e-23 114.0 382 46.1
PSO017G0123 Papaver somniferum HOM05D006421 ORTHO05D008268 6.6e-23 113.6 521 36.3
ClCG05G016810 Citrullus lanatus HOM05D006421 ORTHO05D008268 1.9e-22 112.1 734 49.0
CsaV3_3G046330 Cucumis sativus L. HOM05D006421 ORTHO05D008268 2.5e-22 111.7 514 40.1
Potri.018G026300 Populus trichocarpa HOM05D006421 ORTHO05D008268 2.9e-18 98.2 440 31.6
Lsat_1_v5_gn_5_30240 Lactuca sativa HOM05D006421 ORTHO05D008268 6.6e-15 87.0 215 33.5
ATR0800G069 Amborella trichopoda HOM05D006421 ORTHO05D008268 1.9e-14 85.5 411 45.5
Zm00001eb206500 Zea mays HOM05D006421 ORTHO05D008268 3.1e-12 78.2 485 33.0
CDE07G0223 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 4.4e-11 74.3 139 36.0
Aa31LG2G17740 Aethionema arabicum HOM05D006421 ORTHO05D008268 5.8e-11 73.9 769 43.6
TAR636G0610 Trochodendron aralioides HOM05D006421 ORTHO05D008268 1.3e-10 72.8 158 43.7
unitig_748.g8080 Utricularia gibba HOM05D006421 ORTHO05D008268 1.3e-10 72.8 515 35.9
SEGI_00734 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 1.7e-10 72.4 264 29.9
Os02g0186400 Oryza sativa ssp. japonica HOM05D006421 ORTHO05D008268 9.2e-09 66.6 114 36.0
C02p24000 Brassica napus HOM05D006421 ORTHO05D008268 1.2e-08 66.2 334 53.9
Sabra18G0029000 Salix brachista HOM05D006421 ORTHO05D008268 6.0e-08 63.9 122 39.3
SEGI_28581 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 1.7e-07 62.4 252 29.4
A03p32460 Brassica napus HOM05D003015 ORTHO05D024548 3.0e-07 61.6 119 42.0
FAN15G3111 Fragaria x ananassa HOM05D006421 ORTHO05D008268 3.0e-07 61.6 139 38.8
Atru.chr7.2443 Acer truncatum HOM05D006421 ORTHO05D008268 3.9e-07 61.2 719 42.4
FAN15G3016 Fragaria x ananassa HOM05D006421 ORTHO05D008268 3.9e-07 61.2 263 51.0
BraA07t31256Z Brassica rapa HOM05D000793 ORTHO05D024548 5.0e-07 60.8 119 42.0
CDE06G1662 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 3.3e-06 58.2 71 46.5
FAN15G2294 Fragaria x ananassa HOM05D006421 ORTHO05D008268 4.3e-06 57.8 377 27.3


User provided reference genes

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