Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g011340 Medicago truncatula HOM05D000459 ORTHO05D259760 1.0e-34 149.4 73 100.0
Medtr1g011380 Medicago truncatula HOM05D000459 ORTHO05D002429 2.9e-08 61.6 36 77.8
Zm00001eb257360 Zea mays HOM05D000459 ORTHO05D002429 1.9e-07 58.9 36 75.0
Actinidia07450 Actinidia chinensis HOM05D000459 ORTHO05D002429 3.2e-07 58.2 46 58.7
Ah.14g081360 Amaranthus hybridus HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 66.7
AL7G19170 Arabidopsis lyrata HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
AT4G32600 Arabidopsis thaliana HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
BcaC09g52050 Brassica carinata HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
A01p05790 Brassica napus HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
C01p06360 Brassica napus HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
BolC1t00632H Brassica oleracea HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
BraA01t00548Z Brassica rapa HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
Carub.0007s0795 Capsella rubella HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
CARHR240570 Cardamine hirsuta HOM05D000459 ORTHO05D002429 3.2e-07 58.2 36 75.0
Gohir.A13G204000 Gossypium hirsutum HOM05D000459 ORTHO05D002429 4.1e-07 57.8 37 70.3
Gohir.D13G209300 Gossypium hirsutum HOM05D000459 ORTHO05D002429 4.1e-07 57.8 37 70.3
Gorai.013G238400 Gossypium raimondii HOM05D000459 ORTHO05D002429 4.1e-07 57.8 37 70.3
HanXRQChr17g0539021 Helianthus annuus HOM05D000459 ORTHO05D002429 4.1e-07 57.8 36 75.0
EL10Ac8g18549 Beta vulgaris HOM05D000459 ORTHO05D002429 5.4e-07 57.4 36 69.4
AUR62011035 Chenopodium quinoa HOM05D000459 ORTHO05D002429 5.4e-07 57.4 36 69.4
AUR62033408 Chenopodium quinoa HOM05D000459 ORTHO05D002429 5.4e-07 57.4 36 69.4
Aa31sc91G70 Aethionema arabicum HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
Ciclev10008289m.g Citrus clementina HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
Thhalv10025242m.g Eutrema salsugineum HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
MD15G1115700 Malus domestica HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
Phvul.001G055600 Phaseolus vulgaris HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
Sp7g30370 Schrenkiella parvula HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
TWI34G2005 Tripterygium wilfordii HOM05D000459 ORTHO05D002429 7.0e-07 57.0 36 72.2
TAR383G0910 Trochodendron aralioides HOM05D000459 ORTHO05D002429 7.0e-07 57.0 38 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5731 Anthoceros agrestis HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
arahy.Tifrunner.gnm1.ann1.UE2Z0H Arachis hypogaea HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
MSTRG.25873 Avicennia marina HOM05D000459 ORTHO05D002429 9.2e-07 56.6 49 51.0
BcaB03g12753 Brassica carinata HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
BcaC01g01012 Brassica carinata HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
A08p18110 Brassica napus HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
C03p87250 Brassica napus HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
BolC3t21026H Brassica oleracea HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
BraA08t33763Z Brassica rapa HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
ECA246G2018 Erigeron canadensis HOM05D000653 ORTHO05D002177 9.2e-07 56.6 36 72.2
Sc09g0008830 Simmondsia chinensis HOM05D000459 ORTHO05D002429 9.2e-07 56.6 36 69.4
CSS0006672 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
CANSAT25G3023 Cannabis sativa HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 66.7
ClCG08G012900 Citrullus lanatus HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
MELO3C011213.2 Cucumis melo HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
CsaV3_2G031620 Cucumis sativus L. HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
Migut.E01499 Erythranthe guttata HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
PSO063G1800 Papaver somniferum HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
PSO782G2737 Papaver somniferum HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
Peaxi162Scf00546g00421 Petunia axillaris HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 66.7
Prupe.1G467000 Prunus persica HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
Sed0013992 Sechium edule HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
Solyc12g006940.2 Solanum lycopersicum HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 66.7
Sopen12g002900 Solanum pennellii HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 66.7
PGSC0003DMG400001063 Solanum tuberosum HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 66.7
TWI32G0655 Tripterygium wilfordii HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
TWI63G0824 Tripterygium wilfordii HOM05D000459 ORTHO05D002429 1.2e-06 56.2 36 69.4
Actinidia26422 Actinidia chinensis HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 69.4
Aqoxy7G01858 Aquilegia oxysepala HOM05D000459 ORTHO05D002429 1.6e-06 55.8 54 48.1
DCAR_028739 Daucus carota HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 69.4
Lsat_1_v5_gn_5_99740 Lactuca sativa HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 69.4
Lalb_Chr14g0362011 Lupinus albus HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 66.7
Nitab4.5_0001672g0100 Nicotiana tabacum HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 66.7
Nitab4.5_0005275g0010 Nicotiana tabacum HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 66.7
Peaxi162Scf00256g00712 Petunia axillaris HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 66.7
SHI18613 Sapria himalayana HOM05D000459 ORTHO05D002429 1.6e-06 55.8 37 62.2
Sc14g0000300 Simmondsia chinensis HOM05D000459 ORTHO05D002429 1.6e-06 55.8 36 69.4
MSTRG.11744 Avicennia marina HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Cc00_g21760 Coffea canephora HOM05D000459 ORTHO05D002429 2.0e-06 55.5 49 53.1
Duzib150G1570 Durio zibethinus HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Gohir.A05G010300 Gossypium hirsutum HOM05D000459 ORTHO05D002429 2.0e-06 55.5 37 64.9
Gohir.D05G011100 Gossypium hirsutum HOM05D000459 ORTHO05D002429 2.0e-06 55.5 37 64.9
Gorai.009G011400 Gossypium raimondii HOM05D000459 ORTHO05D002429 2.0e-06 55.5 37 64.9
Hma1.2p1_0018F.1_g013120 Hydrangea macrophylla HOM05D000459 ORTHO05D002429 2.0e-06 55.5 49 53.1
Lj7A713T55 Lonicera japonica HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 72.2
Manes.16G068000 Manihot esculenta HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Os05g0179000 Oryza sativa ssp. japonica HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Psat6g030960 Pisum sativum HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 69.4
Potri.006G247000 Populus trichocarpa HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 69.4
Rhsim03G0245500 Rhododendron simsii HOM05D000459 ORTHO05D002429 2.0e-06 55.5 49 51.0
Sabra06G0193200 Salix brachista HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 69.4
Hund28668 Selenicereus undatus HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Hund28682 Selenicereus undatus HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Thecc.09G144500 Theobroma cacao HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
TPR.G34686 Trifolium pratense HOM05D000459 ORTHO05D002429 2.0e-06 55.5 32 75.0
Zm00001eb282990 Zea mays HOM05D000459 ORTHO05D002429 2.0e-06 55.5 36 66.7
Actinidia13286 Actinidia chinensis HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
MSTRG.1646 Avicennia marina HOM05D000459 ORTHO05D002429 2.7e-06 55.1 49 51.0
Ca_12909_v3 Cicer arietinum L. HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 69.4
COL.COLO4_24052 Corchorus olitorius HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Glyma.06G073100 Glycine max HOM05D000459 ORTHO05D002429 2.7e-06 55.1 33 69.7
Glyma.14G129100 Glycine max HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 69.4
Lsat_1_v5_gn_6_10820 Lactuca sativa HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Lj7A640T26 Lonicera japonica HOM05D000459 ORTHO05D002429 2.7e-06 55.1 41 61.0
Lj5g0025665 Lotus japonicus HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 69.4
Medtr3g107995 Medicago truncatula HOM05D000459 ORTHO05D002429 2.7e-06 55.1 65 44.6
Nitab4.5_0000125g0320 Nicotiana tabacum HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Nitab4.5_0006579g0020 Nicotiana tabacum HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Peaxi162Scf00105g01433 Petunia axillaris HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Rhsim02G0187600 Rhododendron simsii HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Solyc08g067770.3 Solanum lycopersicum HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Sopen08g021680 Solanum pennellii HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
PGSC0003DMG400033616 Solanum tuberosum HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
SGA_v2.0_scaffold163G38100 Striga asiatica HOM05D000459 ORTHO05D002429 2.7e-06 55.1 49 51.0
THA.LOC104803818 Tarenaya hassleriana HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 69.4
TAR624G0660 Trochodendron aralioides HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
vmacro11117 Vaccinium macrocarpon HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
VMungo0647G1737 Vigna mungo HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 69.4
GSVIVG01035722001 Vitis vinifera HOM05D000459 ORTHO05D002429 2.7e-06 55.1 36 66.7
Zm00001eb122400 Zea mays HOM05D000459 ORTHO05D002429 2.7e-06 55.1 37 67.6
Atru.chr7.2328 Acer truncatum HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
ATR0037G021 Amborella trichopoda HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
CDE06G0159 Ceratophyllum demersum HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Cc08_g08340 Coffea canephora HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 63.9
DCAR_001500 Daucus carota HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Dinv41567 Davidia involucrata HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
ECA233G0137 Erigeron canadensis HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Migut.A00277 Erythranthe guttata HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
FvH4_2g30130 Fragaria vesca HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
FAN15G2583 Fragaria x ananassa HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
FAN15G3618 Fragaria x ananassa HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
FAN20G2117 Fragaria x ananassa HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
FAN24G2838 Fragaria x ananassa HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
FAN27G0119 Fragaria x ananassa HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
HanXRQChr02g0048301 Helianthus annuus HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Lsat_1_v5_gn_3_25641 Lactuca sativa HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
Lalb_Chr22g0361341 Lupinus albus HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
Nn8g39285 Nelumbo nucifera HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Oeu031562.1 Olea europaea HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Oeu045177.1 Olea europaea HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 63.9
QL12p031324 Quercus lobata HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 69.4
Rhsim05G0147700 Rhododendron simsii HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
Rhsim09G0074200 Rhododendron simsii HOM05D000459 ORTHO05D000356 3.5e-06 54.7 36 66.7
Sed0000396 Sechium edule HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 66.7
SEGI_13881 Sequoiadendron giganteum HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 63.9
Sc08g0007110 Simmondsia chinensis HOM05D000459 ORTHO05D002429 3.5e-06 54.7 31 74.2
vmacro06188 Vaccinium macrocarpon HOM05D000459 ORTHO05D002429 3.5e-06 54.7 49 51.0
HPP92_000675 Vanilla planifolia HOM05D000459 ORTHO05D002429 3.5e-06 54.7 36 61.1
Actinidia13426 Actinidia chinensis HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 66.7
ECA234G3692 Erigeron canadensis HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 66.7
Lj1g0026242 Lotus japonicus HOM05D000459 ORTHO05D002429 4.6e-06 54.3 57 49.1
MBI04_g35345_MAGBIO Magnolia biondii HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 66.7
Nn2g11839 Nelumbo nucifera HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 63.9
Pp3c3_10570 Physcomitrium patens HOM05D000459 ORTHO05D002429 4.6e-06 54.3 43 58.1
Pp3s52_10 Physcomitrium patens HOM05D000459 ORTHO05D002429 4.6e-06 54.3 43 58.1
Psat5g027600 Pisum sativum HOM05D000459 ORTHO05D002429 4.6e-06 54.3 32 75.0
PGR031G0724 Punica granatum HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 66.7
Rhsim01G0091100 Rhododendron simsii HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 63.9
SMO364G0437 Selaginella moellendorffii HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 66.7
GSVIVG01015445001 Vitis vinifera HOM05D000459 ORTHO05D002429 4.6e-06 54.3 36 66.7
CiPaw.08G015400 Carya illinoinensis HOM05D000459 ORTHO05D002429 6.0e-06 53.9 31 77.4
Haze_21620 Corylus avellana HOM05D000459 ORTHO05D002429 6.0e-06 53.9 36 63.9
Dinv30532 Davidia involucrata HOM05D000459 ORTHO05D002429 6.0e-06 53.9 64 46.9
Glyma.04G071800 Glycine max HOM05D000459 ORTHO05D002429 6.0e-06 53.9 27 85.2
Glyma.17G203800 Glycine max HOM05D000459 ORTHO05D002429 6.0e-06 53.9 36 66.7
HanXRQChr05g0139141 Helianthus annuus HOM05D000459 ORTHO05D002429 6.0e-06 53.9 36 69.4
unitig_578.g16601 Utricularia gibba HOM05D000459 ORTHO05D002429 6.0e-06 53.9 36 63.9
EL10Ac2g02542 Beta vulgaris HOM05D000459 ORTHO05D002429 7.8e-06 53.5 36 61.1
CSS0050503 Camellia sinensis var. sinensis HOM05D000459 ORTHO05D002429 7.8e-06 53.5 36 66.7
CDE07G0909 Ceratophyllum demersum HOM05D000459 ORTHO05D002429 7.8e-06 53.5 71 40.8
Os01g0178700 Oryza sativa ssp. japonica HOM05D000459 ORTHO05D002429 7.8e-06 53.5 36 66.7
TPR.G20109 Trifolium pratense HOM05D000459 ORTHO05D002429 7.8e-06 53.5 36 66.7


User provided reference genes

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