Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 6.1e-146 520.8 260 100.0
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.1e-113 413.7 260 81.2
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.9e-110 402.9 264 76.9
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.6e-109 399.8 267 76.8
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 2.1e-109 399.4 256 79.3
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 3.6e-106 388.7 271 74.9
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 8.1e-106 387.5 266 73.3
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 2.7e-101 372.5 247 75.3
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.5e-99 366.7 248 76.2
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 2.8e-98 362.5 258 69.0
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 9.9e-96 354.0 255 67.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.3e-95 353.6 243 71.2
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.7e-95 353.2 266 65.8
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 2.9e-95 352.4 257 68.1
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.1e-94 350.5 265 66.4
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 4.6e-93 345.1 249 67.5
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 3.9e-92 342.0 252 65.5
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 1.1e-91 340.5 259 64.5
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 2.1e-90 336.3 269 62.8
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.7e-90 335.5 273 63.7
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 4.0e-89 332.0 263 62.0
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 6.9e-89 331.3 277 60.6
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 9.0e-89 330.9 248 66.1
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.2e-88 330.5 256 64.8
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 5.8e-88 328.2 237 67.5
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 7.6e-88 327.8 261 61.7
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 7.6e-88 327.8 261 61.7
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.3e-87 327.0 251 62.9
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.3e-87 327.0 261 60.9
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.3e-87 327.0 223 70.9
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.3e-87 327.0 240 66.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 2.2e-87 326.2 271 62.4
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 4.9e-87 325.1 262 59.9
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 6.4e-87 324.7 233 67.4
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 8.4e-87 324.3 248 66.5
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.4e-86 323.6 251 62.9
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.4e-86 323.6 251 65.7
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.9e-86 323.2 257 64.6
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.9e-86 323.2 245 63.3
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.2e-86 322.4 269 62.5
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 4.2e-86 322.0 251 62.2
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 5.5e-86 321.6 288 57.3
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.2e-85 320.5 251 62.2
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 2.1e-85 319.7 245 64.5
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.5e-85 318.9 248 63.3
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 4.6e-85 318.5 259 60.2
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.3e-84 317.0 262 60.7
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-84 317.0 269 61.3
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.3e-84 317.0 283 58.7
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.3e-84 316.2 260 61.2
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.3e-84 316.2 258 66.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 3.9e-84 315.5 251 61.4
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 5.1e-84 315.1 249 59.8
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 8.7e-84 314.3 258 61.2
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.5e-83 313.5 275 57.5
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 2.5e-83 312.8 259 60.2
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.5e-83 312.8 285 56.8
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 3.1e-81 305.8 253 61.7
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.2e-80 303.9 231 64.9
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.2e-80 303.9 246 58.9
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 2.0e-80 303.1 258 57.4
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 2.0e-80 303.1 240 63.3
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.4e-80 302.4 255 60.0
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.0e-79 300.8 270 55.9
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.7e-79 300.1 242 65.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 4.2e-78 295.4 267 57.7
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.6e-77 293.5 275 55.3
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 3.5e-77 292.4 239 62.8
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 4.6e-77 292.0 239 60.3
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.8e-76 290.0 266 59.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 4.3e-75 285.4 237 62.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.0e-72 276.6 249 54.2
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 3.4e-72 275.8 247 57.9
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 7.6e-72 274.6 271 54.6
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 5.0e-71 271.9 255 52.9
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 9.3e-70 267.7 245 60.0
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.7e-69 266.2 207 65.2
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 3.6e-69 265.8 205 63.4
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.1e-67 260.8 246 57.7
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.5e-67 260.4 209 63.2
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 2.2e-66 256.5 252 50.0
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.4e-64 249.2 252 53.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 5.9e-64 248.4 253 52.2
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.7e-63 246.9 390 39.5
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 6.5e-63 245.0 241 47.7
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 7.2e-62 241.5 206 59.7
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.7e-61 239.6 209 58.9
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.7e-61 239.6 235 53.6
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 6.7e-60 235.0 202 59.9
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.5e-59 233.8 253 49.4
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.5e-59 233.8 268 50.7
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.5e-59 233.8 268 50.7
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 3.4e-56 222.6 208 50.5
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.7e-55 220.3 150 67.3
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 6.7e-52 208.4 190 57.4
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 2.0e-51 206.8 131 78.6
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.6e-48 197.2 173 57.8
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 7.7e-48 194.9 157 59.9
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 5.0e-47 192.2 250 46.0
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.2e-46 189.5 256 44.1
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.2e-45 187.6 160 56.2
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 6.1e-45 185.3 224 44.6
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 7.5e-43 178.3 150 56.7
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 2.8e-42 176.4 101 83.2
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 4.1e-41 172.6 125 66.4
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 7.0e-41 171.8 117 66.7
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.7e-39 167.2 149 57.0
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 3.2e-38 162.9 134 60.4
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 9.4e-38 161.4 134 60.4
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.6e-37 160.6 121 59.5
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 4.7e-37 159.1 134 59.7
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 4.7e-37 159.1 134 59.7
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.2e-35 154.5 291 36.1
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.3e-34 151.0 136 58.8
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.7e-34 150.6 124 58.9
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.4e-33 147.5 102 75.5
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 3.8e-31 139.4 142 50.7
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.8e-31 139.4 130 56.2
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.3e-26 124.4 299 27.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.2e-24 117.9 121 55.4
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.9e-23 113.2 71 73.2
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 4.7e-21 105.9 99 54.5
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 4.7e-21 105.9 56 85.7
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 6.1e-21 105.5 166 39.2
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 3.0e-20 103.2 117 49.6
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.5e-19 100.9 96 51.0
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 7.5e-19 98.6 76 56.6
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.3e-18 97.8 103 46.6
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.3e-18 97.8 93 53.8
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.7e-18 97.4 61 70.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.6e-11 73.6 77 44.2
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.7e-08 63.5 47 63.8


User provided reference genes

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