Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.8e-55 218.4 113 100.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 6.5e-52 207.2 113 96.5
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 5.5e-51 204.1 113 94.7
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.6e-50 201.4 113 93.8
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.0e-50 200.3 113 92.0
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.0e-44 183.3 109 88.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.8e-44 181.4 116 82.8
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 6.5e-44 180.6 108 87.0
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.1e-43 179.9 109 87.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.9e-43 179.1 107 85.0
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 4.2e-43 177.9 100 95.0
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 5.5e-43 177.6 111 78.4
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 9.4e-43 176.8 109 83.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.2e-42 176.4 101 87.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.7e-42 175.3 106 84.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 4.7e-42 174.5 109 84.4
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 4.7e-42 174.5 107 79.4
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 4.7e-42 174.5 107 79.4
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 5.2e-41 171.0 109 79.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.8e-41 170.6 109 78.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.8e-41 170.6 109 76.1
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.5e-40 169.5 111 78.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-40 169.5 109 78.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.6e-40 168.7 110 80.0
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.4e-40 168.3 109 78.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.5e-40 167.2 103 82.5
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.5e-40 167.2 103 82.5
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 9.8e-40 166.8 108 77.8
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.2e-39 165.6 108 80.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.8e-39 165.2 102 79.4
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 3.7e-39 164.9 108 77.8
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.7e-39 164.9 114 75.4
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 8.3e-39 163.7 115 74.8
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 8.3e-39 163.7 102 78.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.1e-38 163.3 110 75.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.8e-38 162.5 101 77.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.8e-38 162.5 106 75.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 3.1e-38 161.8 103 78.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 4.1e-38 161.4 113 73.5
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 4.1e-38 161.4 113 73.5
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 7.0e-38 160.6 109 79.8
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 7.0e-38 160.6 107 75.7
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 9.1e-38 160.2 115 73.9
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.2e-37 159.8 114 73.7
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.6e-37 159.5 112 74.1
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.6e-37 159.5 113 72.6
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 76.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 76.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.0e-37 159.1 102 76.5
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.0e-37 159.1 110 73.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.7e-37 158.7 108 72.2
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 2.7e-37 158.7 113 74.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 3.5e-37 158.3 107 74.8
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 4.5e-37 157.9 102 75.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.9e-37 157.5 102 75.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.9e-37 157.5 102 75.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.9e-37 157.5 102 77.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.7e-37 157.1 102 74.5
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.7e-37 157.1 108 71.3
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.3e-36 156.4 108 73.1
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.3e-36 156.4 114 72.8
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.3e-36 156.4 107 76.6
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.7e-36 156.0 107 75.7
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-36 155.6 107 75.7
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-36 155.6 107 74.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.2e-36 155.6 111 73.9
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.2e-36 155.6 111 73.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 5.0e-36 154.5 107 75.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.5e-36 154.1 103 77.7
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.9e-35 152.5 101 75.2
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.5e-35 152.1 114 71.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.2e-35 151.4 113 71.7
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.5e-35 151.0 107 74.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 9.5e-35 150.2 117 70.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 9.5e-35 150.2 109 73.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.7e-34 147.9 109 71.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 6.1e-34 147.5 113 69.0
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 6.1e-34 147.5 114 70.2
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.0e-33 146.7 107 72.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.4e-33 146.4 103 72.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.4e-33 146.4 103 72.8
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.4e-33 146.4 107 70.1
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-33 146.0 110 70.9
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.3e-33 145.6 111 68.5
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.3e-33 145.6 107 69.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.0e-33 145.2 106 70.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 5.2e-33 144.4 112 68.8
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.2e-33 144.4 90 75.6
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 5.2e-33 144.4 109 68.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.8e-33 144.1 111 73.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 8.8e-33 143.7 109 69.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 8.8e-33 143.7 109 69.7
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 8.8e-33 143.7 109 69.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.0e-32 142.5 115 67.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.6e-32 142.1 115 68.7
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.6e-32 142.1 106 68.9
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 3.4e-32 141.7 110 67.3
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 3.4e-32 141.7 110 67.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.4e-32 141.4 102 68.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.4e-32 141.4 108 67.6
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 5.7e-32 141.0 104 71.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 9.8e-32 140.2 112 66.1
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.3e-31 139.8 111 71.2
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.3e-31 139.8 97 73.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.8e-31 138.7 107 64.5
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 8.3e-31 137.1 110 69.1
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 8.3e-31 137.1 94 75.5
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.1e-30 136.7 106 67.9
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.4e-30 136.3 108 63.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.4e-30 135.6 108 64.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.1e-30 135.2 110 63.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.1e-30 134.8 109 64.2
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-29 132.5 80 81.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.7e-29 132.1 81 86.4
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.5e-29 131.3 106 64.2
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 4.5e-29 131.3 100 69.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.3e-28 129.8 109 63.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.7e-28 129.4 101 61.4
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.9e-28 128.6 103 66.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 8.6e-28 127.1 104 64.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-26 122.9 105 61.9
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 4.0e-25 118.2 111 60.4
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.3e-23 113.2 105 60.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.3e-23 113.2 105 60.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 6.4e-23 110.9 108 56.5
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 8.3e-23 110.5 110 56.4
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.8e-22 109.4 116 56.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.1e-22 108.2 102 54.9
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.4e-22 107.8 87 67.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 5.4e-22 107.8 104 58.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 9.2e-22 107.1 108 55.6
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 9.2e-22 107.1 105 56.2
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 106.7 109 55.0
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.6e-21 106.3 105 56.2
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-21 105.1 52 96.2
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.6e-21 104.8 104 55.8
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 7.8e-21 104.0 103 55.3
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.0e-20 103.6 107 56.1
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.9e-20 101.7 104 56.7
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.1e-19 100.1 111 54.1
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.9e-19 99.4 79 69.6
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 9.5e-19 97.1 59 89.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.8e-18 95.5 101 48.5
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.3e-17 92.4 79 69.6
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.8e-17 90.9 98 57.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 5.8e-16 87.8 106 48.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.7e-15 85.1 61 77.0
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 8.3e-15 84.0 104 50.0
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.4e-14 81.3 56 78.6
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-13 80.1 67 59.7
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.7e-13 79.0 93 44.1
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.6e-13 78.2 58 72.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 7.8e-13 77.4 109 41.3
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.3e-11 70.9 51 74.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.6e-10 69.7 67 55.2
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 4.7e-10 68.2 69 60.9
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 6.2e-10 67.8 112 38.4
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.8e-09 66.2 40 80.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 3.4e-08 62.0 97 44.3
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.9e-07 58.2 58 58.6
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 1.4e-06 56.6 55 50.9
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 3.2e-06 55.5 64 46.9


User provided reference genes

Program Settings